Gene Information

Name : Meso_0107 (Meso_0107)
Accession : YP_672677.1
Strain : Chelativorans sp. BNC1
Genome accession: NC_008254
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 135736 - 137025 bp
Length : 1290 bp
Strand : +
Note : KEGG: dvu:DVUA0119 type III secretion system ATPase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region H+-transporting two-sector ATPase, alpha/beta subunit-like; SMART: ATPase

DNA sequence :
ATGACGCGGGAACCCGAATTGAAGCGGCCGTTCAGGCGCCGCGGGCGGGTCAGTAAGGCCGTGGGGCCTGTGGTGCGGGC
GGCGGGCAATTTCTGCGTGGGGGAAATCTGCGCGGTTTCGCGCAGCAATGGCGATCCAATCCTGGCTGAGGTGGTCGGCT
TCGATCAGGGGGAAGCCATCCTGACTCCATACGGAGGCACGGCCGGCATATCGCACAACTCCACGATTGAGCCGCTGATG
AGTACATTTGAAGTGCCGGTTGGCGAGGAACTGACGGGACGGGTGATCGATGCGATGGGCAAGCCGATAGATGCCGGCCC
GAGCGTGACATCATGCGCGTTCTATCCCGGCCATCGGACGGCTCCCAATCCGATGCTGCGACCGACTATCGACCGCCCCT
TCATTCTTGGAGTGAGGGTTTTGGATGGTGCCCTGACATGTGGCGAGGGGCAGCGCATGGGCATTTTTGCCGCCGCCGGC
GGGGGAAAATCGACGCTGGTTTCCCTAATGGTGCGTTTCGCCGAATACGACCGCTGCGTAATTGCGCTGATTGGCGAGCG
TGGTCGCGAAGTGCGCGAATTCCTCGAACATCAGCTGGGGCCGACAGGTCTTGCCAAATCCATTGTCGTGGTGGCCACAT
CGGATCGCCCTGCGATCGAGCAGGTGAAGGCGGCCTACACGGCCACGGCACTCGCTGAATTCCACCGCGACAGAGGCGAG
CGGGTGCTGCTGATCATGGACAGCTTAACCCGTTTTGCCCGCGCGCAACGGCAGATAGGCCTGGCGGCAGGGGAGCCTCC
GACCCGGCGCGGCTTTCCTCCGTCCGTCTTCGAGCTGCTTCCGGGTCTTGTTGAGCGCGCGGGCCTCAGCGGCGATGGCT
CGATCACCGCTTTCTACACGGTTTTGGTGGAAGGCGACGATATGAACGAGCCCGTTGCCGATGAGGTGCGCTCGCTTCTC
GACGGCCATATCGTCCTTTCGCGGAAATTGGCAGAAGCGGGTCACTATCCTCCGGTCGATGTCATTACCAGCACCAGCCG
TATCCTGAGCCGCATCGTTTCTCCGGACCATCTGGAAGCCGTTCACAAGGCGCGCGGGCTCATGTCGAAACTCCAGGAAA
TAGAGCTGCTGCTAAAGATCGGCGAGTATTCGAAGGGTGCCGATGCACTGGCCGATGAGGCCCTGGCCCGCAGGACGGCG
CTGGATGCGTTTCTGCGCCAGGGCGTAAACGAGTTTTCAAGCTTCGAGGAAACCGTTATTGCTCTGAAGCGGGCAGTTGG
CCATGCTTGA

Protein sequence :
MTREPELKRPFRRRGRVSKAVGPVVRAAGNFCVGEICAVSRSNGDPILAEVVGFDQGEAILTPYGGTAGISHNSTIEPLM
STFEVPVGEELTGRVIDAMGKPIDAGPSVTSCAFYPGHRTAPNPMLRPTIDRPFILGVRVLDGALTCGEGQRMGIFAAAG
GGKSTLVSLMVRFAEYDRCVIALIGERGREVREFLEHQLGPTGLAKSIVVVATSDRPAIEQVKAAYTATALAEFHRDRGE
RVLLIMDSLTRFARAQRQIGLAAGEPPTRRGFPPSVFELLPGLVERAGLSGDGSITAFYTVLVEGDDMNEPVADEVRSLL
DGHIVLSRKLAEAGHYPPVDVITSTSRILSRIVSPDHLEAVHKARGLMSKLQEIELLLKIGEYSKGADALADEALARRTA
LDAFLRQGVNEFSSFEETVIALKRAVGHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 1e-104 57
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-95 53
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-95 53
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-94 53
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-95 53
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 6e-95 53
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-94 53
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 3e-94 53
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-88 53
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-93 52
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-93 52
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 4e-80 51
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-79 51
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 5e-79 50
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 4e-79 50
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 6e-80 50
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 3e-78 50
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 2e-78 50
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 1e-78 50
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 5e-80 49
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 1e-75 49
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 1e-75 49
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-83 48
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-83 48
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-84 48
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 7e-83 48
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 7e-83 48
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 3e-82 48
escN YP_003223475.1 translocator EscN Virulence LEE Protein 1e-84 47
escN AAK26715.1 EscN Virulence LEE Protein 2e-84 47
escN AAL57542.1 EscN Virulence LEE Protein 2e-84 47
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-84 47
escN CAI43874.1 EscN protein Virulence LEE Protein 7e-85 47
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-84 47
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-83 47
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-83 47
escN AAC38383.1 EscN Virulence LEE Protein 8e-84 46
escN AAC31513.1 L0034 Virulence LEE Protein 5e-84 46
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 5e-84 46
escN NP_290268.1 hypothetical protein Virulence LEE Protein 6e-84 46
ECs4568 NP_312595.1 EscN Virulence LEE Protein 6e-84 46
escN YP_003236088.1 translocator EscN Virulence LEE Protein 3e-84 46
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-81 46
invC AAS66861.1 InvC Not tested SSR-2 Protein 3e-70 43
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-71 43
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 3e-71 43
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-71 43
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-71 43
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 2e-67 43
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 3e-68 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG0048 Protein 3e-105 58
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG0192 Protein 1e-108 58
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG0390 Protein 6e-103 57
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG2144 Protein 2e-87 49
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG0515 Protein 8e-84 47
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG0730 Protein 4e-84 46
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG0812 Protein 3e-84 46
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG1778 Protein 9e-78 46
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG1254 Protein 7e-77 45
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG2499 Protein 4e-75 45
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG2331 Protein 3e-74 44
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG2459 Protein 1e-69 43
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG0555 Protein 1e-71 43
Meso_0107 YP_672677.1 FliI/YscN family ATPase VFG1008 Protein 3e-69 42