Gene Information

Name : ECP_4562 (ECP_4562)
Accession : YP_672399.1
Strain : Escherichia coli 536
Genome accession: NC_008253
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4770202 - 4770921 bp
Length : 720 bp
Strand : +
Note : -

DNA sequence : 
ATGAATAACGTAAAAAAAATACTGCTGATGGAAGATGATTATGATATTGCAGCTCTGTTGCGGCTTAATCTGCAGGATGA
AGGGTATCAGATAGTTCATGAAGCGGATGGCGCCAGAGCTCGTTTATTACTAGACAAGCAGACCTGGGATGCCGTAATAC
TTGATCTTATGCTGCCTAATGTTAATGGGCTGGAGATTTGCCGTTATATCCGTCAGATGACCAGTTATCTGCCTGTGATT
ATCATCAGTGCCCGTACCAGCGAAACCCACCGCGTCCTGGGACTGGAAATGGGGGCTGATGACTATCTACCGAAACCCTT
TTCCATTCCGGAGCTGATTGCCCGCATCAAAGCGTTGTTTCGTCGTCAGGAAGCCATGGGGCAAAATATTCTCCTGGCAA
GTGGACTGATTTGCTGTCACGGTCTGTGCATCAATCCATTTTCACGTGAAGTTCATTTGCATAATAAACAGGTTGATCTT
ACCCCACGCGAGTTTGATCTGCTGCTCTGGTTTGCACGTCATCCTGGCGAAGTTTTTTCCCGTCTTTCACTGCTGGATAA
TGTCTGGGGGTATCAGCATGAAGGATATGAGCATACAGTCAACACGCATATCAACCGTCTTCGTGCCAAAATTGAACAGG
ATGCAGCAGAGCCAAAGATGATCCAGACCGTCTGGGGAAAAGGGTATAGGTTTTCAGTTGACAATGCAGGAATGCGATAA

Protein sequence : 
MNNVKKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLEICRYIRQMTSYLPVI
IISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEAMGQNILLASGLICCHGLCINPFSREVHLHNKQVDL
TPREFDLLLWFARHPGEVFSRLSLLDNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRFSVDNAGMR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-112 100
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-110 99

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECP_4562 YP_672399.1 DNA-binding response regulator AE015929.1.gene1106. Protein 2e-27 42
ECP_4562 YP_672399.1 DNA-binding response regulator NC_012469.1.7685629. Protein 2e-37 42
ECP_4562 YP_672399.1 DNA-binding response regulator HE999704.1.gene2815. Protein 7e-42 42
ECP_4562 YP_672399.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 1e-32 41
ECP_4562 YP_672399.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 1e-32 41
ECP_4562 YP_672399.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 1e-32 41
ECP_4562 YP_672399.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 1e-32 41
ECP_4562 YP_672399.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 1e-32 41
ECP_4562 YP_672399.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 1e-32 41
ECP_4562 YP_672399.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 1e-32 41
ECP_4562 YP_672399.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 1e-32 41
ECP_4562 YP_672399.1 DNA-binding response regulator HE999704.1.gene1528. Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECP_4562 YP_672399.1 DNA-binding response regulator VFG1563 Protein 4e-112 100
ECP_4562 YP_672399.1 DNA-binding response regulator VFG1702 Protein 5e-111 99