Gene Information

Name : ECP_4541 (ECP_4541)
Accession : YP_672378.1
Strain : Escherichia coli 536
Genome accession: NC_008253
Putative virulence/resistance : Virulence
Product : protein PapA
Function : -
COG functional category : N : Cell motility
COG ID : COG3539
EC number : -
Position : 4753507 - 4754124 bp
Length : 618 bp
Strand : -
Note : -

DNA sequence : 
GTGTGTTCAGTAATGAAAAAGAGGTTGTTATTTATGATTAAGTCGGTTATTGCCGGTGCGGTAGCTATGGCAGTGGTGTC
TTTTGGTGTAAATGCTGCTGCAACTGTTCCTCAGGGGCAGGGTAAGGTAACTTTTAGCGGAACTGTGGTTGATGCACCAT
GTGGTATTGATGCGCAGTCAGCTGATCAGTCTGTCGATTTTGGCCAGATATCAAAAGTCTTTCTGGACAATGATGGGCAA
ACCACACCTAAGGCTTTTGATATTAAGCTCGTGAATTGCGATATTACTAACTATAAGAAACCAGCCACTGGTGCCGCTCC
AGGCGGCGCACCTAAAGCAGGAACAGTATCCATGACATTCTCCGGTGTTACAGCAGGTGCAGGTAACGCCAATGACATGT
TACAGACGAATGGCGAGACCAATACAGCCATCGTTGTTATCGACCCGCATGGCAAACGTGTGAAGTTTGATGGTCGGACC
TCTACCGGGGTTTCAAATCTGATTAATGGTGATAACACGATTCATTTCACTGCCGCAGTTATGAAAGATGGTAGTGGCAA
CCATGTAAAAGAGGGGGCCTTCTCAGCCGTTGCGAATTTCAACCTGACTTATCAGTAA

Protein sequence : 
MCSVMKKRLLFMIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQISKVFLDNDGQ
TTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNANDMLQTNGETNTAIVVIDPHGKRVKFDGRT
STGVSNLINGDNTIHFTAAVMKDGSGNHVKEGAFSAVANFNLTYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfA CAD42031.1 PrfA protein Virulence PAI II 536 Protein 6e-75 100
papA NP_755467.1 PapA protein Virulence PAI I CFT073 Protein 1e-66 79
papA AAL67417.1 PapA Virulence PAI II CFT073 Protein 5e-60 75
papA_2 NP_757036.1 PapA protein Virulence PAI II CFT073 Protein 3e-62 75
papA YP_002414017.1 P-fimbriae major subunit Not tested Not named Protein 4e-55 74
papA AAZ04426.1 major fibrial protein Virulence PAI I APEC-O1 Protein 1e-45 60
papA YP_854256.1 major fibrial protein Virulence PAI I APEC-O1 Protein 2e-45 60
pixA CAE85161.1 PixA protein Not tested PAI V 536 Protein 4e-32 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECP_4541 YP_672378.1 protein PapA VFG1550 Protein 3e-75 100
ECP_4541 YP_672378.1 protein PapA VFG0882 Protein 4e-67 79
ECP_4541 YP_672378.1 protein PapA VFG0893 Protein 9e-63 75