Gene Information

Name : ECP_3860 (ECP_3860)
Accession : YP_671732.1
Strain : Escherichia coli 536
Genome accession: NC_008253
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4022929 - 4023408 bp
Length : 480 bp
Strand : +
Note : -

DNA sequence :
ATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCGCATTGTCATTGACGTCGATGGTGTTAC
TCTCGCTGAACTGATTAACGTGGTCTGCGATAATGGCTACTCCCTTCGTGTTGTTGATGAATCTGACCGGGCCTCAACAG
ACTGCACGCCACCATTTGCTGTCCTGACCGGCATACGCTGCAGTACCGCGCATATCACGGCAAAGGACAACGCCTGGCTG
TACTCGCTGTCGCATCAGACGAATGACACCGGCGAATCAGAATGGATTCATTTTACAGGCAGCGGATATCTGTTACGTAC
CGATGCGAGGTCATACCCGGTTCTGCGGCTTAAACGCCTGGGGCTATCAAAAACGTTCCGTCGTCTGATTGCCACACTCA
TCCGGCGTTATGGCGTCAGTCTCATTCATCTGGATGCCAGTGCCGGATGCCTGCCGGGTTTACCCACTTTCGACTGGTAA

Protein sequence :
MMTLEADSVNVQALDMGRIVIDVDGVTLAELINVVCDNGYSLRVVDESDRASTDCTPPFAVLTGIRCSTAHITAKDNAWL
YSLSHQTNDTGESEWIHFTGSGYLLRTDARSYPVLRLKRLGLSKTFRRLIATLIRRYGVSLIHLDASAGCLPGLPTFDW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
z5092 CAD33790.1 Z5092 protein Not tested PAI I 536 Protein 3e-70 100
unnamed AAL57574.1 unknown Not tested LEE Protein 2e-59 92
unnamed CAI43904.1 hypothetical protein Not tested LEE Protein 3e-64 92
unnamed CAD42102.1 hypothetical protein Not tested PAI II 536 Protein 1e-62 88
unnamed AAC31487.1 L0008 Not tested LEE Protein 4e-65 88
Z1223 NP_286758.1 hypothetical protein Not tested TAI Protein 4e-64 88
unnamed ACU09434.1 conserved hypothetical protein Not tested LEE Protein 4e-65 88
Z1662 NP_287164.1 hypothetical protein Not tested TAI Protein 4e-64 88
Z5092 NP_290243.1 hypothetical protein Not tested LEE Protein 7e-65 88
ECs4540 NP_312567.1 hypothetical protein Not tested LEE Protein 7e-65 88
unnamed CAD66208.1 hypothetical protein Not tested PAI III 536 Protein 2e-63 88
unnamed AAL08479.1 unknown Not tested SRL Protein 3e-63 87
c5148 NP_756996.1 hypothetical protein Not tested PAI II CFT073 Protein 4e-60 85
yeeW CAI43849.1 YeeW protein Not tested LEE Protein 6e-59 83
yeeW CAE85205.1 YeeW protein Not tested PAI V 536 Protein 5e-59 83
yeeW ADD91698.1 YeeW Not tested PAI-I AL862 Protein 5e-60 83
aec77 AAW51760.1 Aec77 Not tested AGI-3 Protein 8e-58 82
yeeW AAZ04462.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 5e-57 82
APECO1_3485 YP_854326.1 hypothetical protein Not tested PAI I APEC-O1 Protein 8e-57 82
yeeW NP_708774.1 hypothetical protein Not tested SHI-1 Protein 4e-58 81
yeeW NP_838488.1 hypothetical protein Not tested SHI-1 Protein 4e-58 81
unnamed AAK00483.1 unknown Not tested SHI-1 Protein 3e-53 80
unnamed AAL67388.1 L0008-like protein Not tested PAI II CFT073 Protein 3e-49 79
ECO103_3593 YP_003223450.1 hypothetical protein Not tested LEE Protein 6e-57 78

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECP_3860 YP_671732.1 hypothetical protein VFG1531 Protein 1e-70 100
ECP_3860 YP_671732.1 hypothetical protein VFG1621 Protein 5e-63 88
ECP_3860 YP_671732.1 hypothetical protein VFG0787 Protein 2e-65 88
ECP_3860 YP_671732.1 hypothetical protein VFG1683 Protein 1e-63 88
ECP_3860 YP_671732.1 hypothetical protein VFG1070 Protein 1e-63 87
ECP_3860 YP_671732.1 hypothetical protein VFG0664 Protein 1e-58 81