Gene Information

Name : ECP_3840 (ECP_3840)
Accession : YP_671712.1
Strain : Escherichia coli 536
Genome accession: NC_008253
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 4009726 - 4011057 bp
Length : 1332 bp
Strand : -
Note : -

DNA sequence : 
GTGGATCACTATTGCACCGTTCGTGACAGCAGACTCCTGCTCCTGAGGAACCGAGAGAGAACGAATGAATGCCCTGAGAA
TGGTCATTCCGCCACGATATCCCTGGTCTCTGATCTCGCGAGCGATTACCGTTGCCGGGATTTTGTAAGGATGAGCATCG
GCGATGCGTTGACGAATATAATCCCGGTACTGCCATCCGCCCTGCGACAGTCTTCAGCCCGTAAACCGTTACCGGCCTCA
CTTCCCCGTGAAACCCGGGTTATCCGGCCGGAAGAGGAATGCTGTCTTGCCTGTGGTGGCGAACTCAGTTCTCTGGGATG
TGATGTGTCAGAGCAACTGGAGCTTATCAGCAGCGCCTTTAAGGTTATCGAAACACAACGTCCGAAACTGGCCTGTTGCC
GGTGCGACCATATCGTGCAGGCTCCGGTGCCTTCAAAACCCATTGCACGCAGTTATGCCGGAGCGGGGCTTCTGGCCCAT
GTCGTCACCGGGAAGTATGCAGACCATCTGCCGTTATACCGCCAGTCAGAAATATACCGTCGTCAGGGTGTGGAGCTGAG
CCGTGCCACACTGGGGCGCTGGACAGGTGCTGCTGCTGAACTGCTGGAGCCGTTGTATGACGTCCTGCGCCAGTATGTGC
TGATGCCCGGTAAAGTCCATGCCGATGATATCCCCGTTCCGGTCCAGGAGCCGGGCAGTGGTAAAACAAGGACTGCCCGG
CTGTGGGCCTACGTCCGTGATGACCGTAATGCCGGTTCACAGATGCCCCCGGCGGTCTGGTTCGCGTACTCACCGGACCG
GAAAGGTATCCATCCACAAAATCATCTGGCCGGTTACAGCGGTGTGCTTCAGGCCGATACTTACGGTTGTTACCGGGTGT
TATACGAATCCGGCAGAATAACGGAAGCCGCGTGTATGGCTCATGCCCGGAGAAAAATCCACGATGTGCATGCAAGAGTG
TCCACCGACATCACCACGGAAGCACTGCAGCGTATCGGTGAACTGTATGCCATAGAGGCAGAAGTCCGGGGATGTACAGC
AGAACAGCGTCTGGCGGCAAGAAAAGCCAGAGCTGCGCCACTGATGCAGTCACTGTATGACTGGATACAGACTCAGATGA
AAACACTGTCGCGTCACTCGGATACGGCAAAAGCGTTCGCATACCTGCTGAAACAGTGGGATGGCCTGAACGTGTACCGC
AGTAATGGCCAGGTGGAAATCGACAACAACATTGCAGAGAACGCCTTACGGGGAGTGGCCGTAGGCCGGAAAAACTGGCT
CTGTGTGTCACGAAGGAGTACTTATGGCAACAATGTGAAAATTGCAGCATAA

Protein sequence : 
MDHYCTVRDSRLLLLRNRERTNECPENGHSATISLVSDLASDYRCRDFVRMSIGDALTNIIPVLPSALRQSSARKPLPAS
LPRETRVIRPEEECCLACGGELSSLGCDVSEQLELISSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAH
VVTGKYADHLPLYRQSEIYRRQGVELSRATLGRWTGAAAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTAR
LWAYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADTYGCYRVLYESGRITEAACMAHARRKIHDVHARV
STDITTEALQRIGELYAIEAEVRGCTAEQRLAARKARAAPLMQSLYDWIQTQMKTLSRHSDTAKAFAYLLKQWDGLNVYR
SNGQVEIDNNIAENALRGVAVGRKNWLCVSRRSTYGNNVKIAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 2e-167 100
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 7e-115 69
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 6e-115 69
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 2e-98 63
tnp AEA34686.1 transposase Not tested Not named Protein 1e-99 63
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 2e-97 62
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 4e-98 62
unnamed AAC31494.1 L0015 Not tested LEE Protein 3e-98 62
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 4e-98 62
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 3e-98 62
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 3e-98 62
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 3e-98 62
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 2e-97 62
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 7e-98 62
unnamed AAL57570.1 unknown Not tested LEE Protein 2e-98 62
unnamed AAL08460.1 unknown Not tested SRL Protein 3e-81 61
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-84 56
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 2e-65 53
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 4e-61 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECP_3840 YP_671712.1 transposase VFG1513 Protein 1e-167 100
ECP_3840 YP_671712.1 transposase VFG0793 Protein 2e-98 62
ECP_3840 YP_671712.1 transposase VFG1051 Protein 2e-81 61
ECP_3840 YP_671712.1 transposase VFG1736 Protein 3e-80 56