Gene Information

Name : ECP_3519 (ECP_3519)
Accession : YP_671396.1
Strain : Escherichia coli 536
Genome accession: NC_008253
Putative virulence/resistance : Virulence
Product : outer membrane usher protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 3675350 - 3677944 bp
Length : 2595 bp
Strand : -
Note : -

DNA sequence :
ATGAACCTAAAGCTCAAAAGATGCGAATATTGGATGGCGGCACAAAAGCAGATGAAACGGGTTGTGCCGCTTCTTCTGGT
TATTATGCCTGCATGTTCAATCGCGGGAATGCGCTTTAACCCTGCTTTTCTGTCGGGTGATACTGAAGCTGTTGCTGACT
TATCCCGCTTCGAGAAAGGGATGACTTATCTTCCTGGTAGCTATGAAGTCGAAGTTTGGGTCAATGATTCCCCTTTACTC
TCTCGTACTGTAACTTTTAAAGCAGACGATGAGAATCAACTGATTCCCTGCCTTTCACTTGCTGACTTATTAAGCCTTGG
AATTAACAAAAATGCGCTGCCAGAGCAGGCTTTGGCTTCATCTGAAAATAGTTGCCTTGATTTGCGTATCTGGTTTCCCG
ATGTGCATTACATGCCGGAGCTGGATGCACAGAGACTTAAACTGACCTTTCCACAGGCGATAATAAAACGTGACGCTCGC
GGATATATTCCACCAGAACAGTGGGATAACGGTATTACAGCTTTTTTGCTGAATTATGACTTTTCTGGTAATAACGATCG
TGGTGATTACTCTTCAAATAACTATTATTTAAATCTTCGCGCTGGGATCAATATTGGTGCATGGCGTTTTCGCGATTATT
CAACCTGGAGTCGTGGGAGTAATTCAGCAGGTAAACTGGAGCATATCAGTAGTACGTTGCAGCGCGTTATTATTCCTTTC
AGAAGTGAATTAACGCTAGGAGATACATGGTCATCATCAGATGTTTTCGACAGTGTTAGTATTCGTGGCATAAAACTGGA
ATCTGACGAAAATATGTTGCCCGATAGTCAAAGTGGTTTCGCTCCCACGGTGCGCGGAATTGCGAAAAGTCGCGCTCAGG
TAACAATCAAACAGAATGGTTATGTCATTTATCAAACCTATATGCCGCCGGGACCGTTTGAGATTAGCGATCTTAACCCG
ACATCATCTGCGGGAGATCTGGAAGTTACCATCAAAGAGTCTGATAATTCAGAAACTGTCTATACCGTACCTTATGCCGC
TGTCCCCATCCTGCAACGAGAAGGTCATTTAAAATATTCTACTACGGTTGGCCAATATCGAAGCAATAGCTATAACCAGA
AAAGTCCTTATGTATTTCAGGGGGAATTAATTTGGGGTTTACCCTGGGATATTACGGCTTATGGTGGGGCACAATTCTCT
GAGGATTACCGGGCGTTGGCGCTCGGCCTTGGCCTGAATCTGGGTGTATTTGGTGCAACATCGTTTGATGTTACTCAGGC
TAACAGTTCGCTTGTGGATGGGAGCAAACATCAAGGGCAATCTTATCGTTTTCTTTATTCCAAATCGTTAGTTCAGACAG
GAACAGCATTCCATATTATTGGCTATCGTTATTCAACCCAGGGCTTTTACACTTTAAGTGATACGACATACCAACAAATG
TCAGGGACTGTTGTTGATCCAAAAACGTTAGATGATAAAGATTACGTTTATAACTGGAATGATTTTTATAACTTGCGTTA
TAGCAAACGTGGAAAATTTCAGGCTAGTGTATCGCAACCTTTCGGTAACTACGGGTCTATGTATTTATCGGCTAGTCAGC
AAACATACTGGAATACTGATAAAAAAGATTCTTTATACCAAGTTGGTTATAACACCAGTATTAAGGGTATCTATCTAAAT
GTTGCGTGGAATTACAGTAAATCACCAGGGACAAATGCGGATAAAATTGTCTCGCTAAATGTCTCATTACCTATAAGTAA
TTGGTTATCTTCCACGAATGATGGGCGCTCATCATCGAATGCCATGACTGCAACGTATGGTTATAGTCAGGATAACCACG
GACAGGTAAACCAATATACGGGGGTATCTGGTTCTCTGTTGGAGCAGCATAATCTCAGTTATAACATACAACATGGTTTT
GCTAATCAGGATAATAGCAGTAGTGGTTCTGTTGGTGTTAATTATCGTGGGGCATATGGTTCCTTGAATTCCGCCTACAG
TTACGATAATGAAGGTAATCAACAAATAAACTATGGCATCAGTGGTGCTCTTGTTGTACATGAAAATGGTCTTACGTTGA
GTCAACCATTAGGTGAAACTAATGTTTTGATAAAAGCGCCTGGAGCGAATAATGTGGATGTTCAGCGGGGGACAGGAATA
TCCACTGACTGGCGTGGATATGCAGTTGTTCCTTATGCAACAGAATATAGACGTAATAATATTTCATTAGATCCTATGTC
AATGAATATGCATACTGAACTGGATATCACTTCCACTGAAGTTATTCCGGGAAAAGGTGCGTTAGTTCGTGCAGAGTTTG
CTGCTCATATCGGTATTCGTGGTTTGTTCACAGTTCGTTATCGTAATAAATCAGTCCCATTCGGTGCTACAGCCAGCGCT
CAGATTAAAAACAGTAGTCAAATTACCGGGATTGTCGGCGATAATGGACAACTTTATCTCTCAGGATTGCCTTTAGAAGG
TGTTATTAATATCCAGTGGGGAGACGGTGTTCAGCAAAAATGTCAGGCTAATTACAAGCTCCCTGAAACAGAACTGGATA
ATCCTGTTAGCTATGCAACTCTGGAGTGCCGCTAA

Protein sequence :
MNLKLKRCEYWMAAQKQMKRVVPLLLVIMPACSIAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEVWVNDSPLL
SRTVTFKADDENQLIPCLSLADLLSLGINKNALPEQALASSENSCLDLRIWFPDVHYMPELDAQRLKLTFPQAIIKRDAR
GYIPPEQWDNGITAFLLNYDFSGNNDRGDYSSNNYYLNLRAGINIGAWRFRDYSTWSRGSNSAGKLEHISSTLQRVIIPF
RSELTLGDTWSSSDVFDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNGYVIYQTYMPPGPFEISDLNP
TSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHLKYSTTVGQYRSNSYNQKSPYVFQGELIWGLPWDITAYGGAQFS
EDYRALALGLGLNLGVFGATSFDVTQANSSLVDGSKHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQM
SGTVVDPKTLDDKDYVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTDKKDSLYQVGYNTSIKGIYLN
VAWNYSKSPGTNADKIVSLNVSLPISNWLSSTNDGRSSSNAMTATYGYSQDNHGQVNQYTGVSGSLLEQHNLSYNIQHGF
ANQDNSSSGSVGVNYRGAYGSLNSAYSYDNEGNQQINYGISGALVVHENGLTLSQPLGETNVLIKAPGANNVDVQRGTGI
STDWRGYAVVPYATEYRRNNISLDPMSMNMHTELDITSTEVIPGKGALVRAEFAAHIGIRGLFTVRYRNKSVPFGATASA
QIKNSSQITGIVGDNGQLYLSGLPLEGVINIQWGDGVQQKCQANYKLPETELDNPVSYATLECR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 2e-171 46
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 3e-171 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECP_3519 YP_671396.1 outer membrane usher protein VFG0446 Protein 2e-173 47
ECP_3519 YP_671396.1 outer membrane usher protein VFG0876 Protein 3e-180 46
ECP_3519 YP_671396.1 outer membrane usher protein VFG1645 Protein 2e-171 44
ECP_3519 YP_671396.1 outer membrane usher protein VFG0912 Protein 5e-171 44
ECP_3519 YP_671396.1 outer membrane usher protein VFG0454 Protein 1e-162 43