Gene Information

Name : ECP_3008 (ECP_3008)
Accession : YP_670892.1
Strain : Escherichia coli 536
Genome accession: NC_008253
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG3596
EC number : -
Position : 3167566 - 3168438 bp
Length : 873 bp
Strand : +
Note : -

DNA sequence :
ATGAATCCGTCTGATGCCATTGAGGCAATTGAAAAACCGCTCTCCTCCCTGCCTTACTCACTTTCCCGTCACATCCTGGA
ACATCTGCGCAAACTCACCAGTCACGAACCCGTGATTGGCATTATGGGGAAAAGCGGGGCCGGTAAATCCTCACTCTGTA
ATGCACTGTTTCAGGGGGAGGTCACCCCGGTCAGTGATGTTCACGCCGGCACCCGGGAAGTGCGGCGCTTCCGTCTGAGT
GGCCATGGTCACAACATGGTTATCACTGACCTGCCCGGGGTGGGCGAGAGCCGGGACAGGGATGCAGAGTATGAAGCCCT
GTACCGTGACATTCTGCCTGAACTTGACCTGGTACTGTGGCTGATTAAAGCCGATGACCGTGCCCTGTCTGTGGATGAGT
ATTTCTGGCGACACATCCTGCACCGGGGACATCAGCAGGTGCTGTTTGTGGTGACGCAGGCCGATAAAACGGAGCCCTGC
CATGAATGGGATGTGGCCGGCATTCAGCCTTCTCCCGCACAGGCACAGAATATTCGCGAAAAAACGGAGGCGGTATTCCG
TCTGTTCCGGCCCGTACATCCGGTTGTGGCCGTATCGGCCCGCACCGGCTGGGAACTGGATACGCTGGTCAGTGCGCTCA
TGACAGCGCTTCCCGACCATGCCGCCAGTCCCCTGATGACCCGCCTGCAGGACGAGCTGCGCACGGAATCTGTCCGGTCT
CAGGCCCGTGAACAGTTTACCGGTGCGGTGGACCGGATATTTGACACAGCGGAGAGCGTCTGTATTGCCTCTGTTGCACG
CACGGTTCTGCGTGCCGTCCGTGACTCGGTGGTCTCTGTTGCCCGCGCTGTATGGAACTGGATTTTCTTCTGA

Protein sequence :
MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFRLS
GHGHNMVITDLPGVGESRDRDAEYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQADKTEPC
HEWDVAGIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRS
QAREQFTGAVDRIFDTAESVCIASVARTVLRAVRDSVVSVARAVWNWIFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 1e-126 100
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 1e-125 99
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 1e-125 99
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 1e-125 99
unnamed AAL99256.1 unknown Not tested LEE Protein 7e-124 98
unnamed AAL08471.1 unknown Not tested SRL Protein 2e-125 98
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 2e-125 98
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 5e-123 97
Z1210 NP_286745.1 histone Not tested TAI Protein 8e-123 97
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 8e-123 97
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 7e-123 97
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 2e-123 97
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 1e-122 97
unnamed AAL67395.1 unknown Not tested PAI II CFT073 Protein 2e-44 41
APECO1_3493 YP_854318.1 hypothetical protein Not tested PAI I APEC-O1 Protein 3e-44 41
ORF_43 AAZ04452.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-44 41
c5162 NP_757010.1 hypothetical protein Not tested PAI II CFT073 Protein 3e-44 41
unnamed CAD42093.1 hypothetical protein Not tested PAI II 536 Protein 1e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECP_3008 YP_670892.1 hypothetical protein VFG1674 Protein 1e-125 98
ECP_3008 YP_670892.1 hypothetical protein VFG1062 Protein 1e-125 98
ECP_3008 YP_670892.1 hypothetical protein VFG0654 Protein 3e-123 97
ECP_3008 YP_670892.1 hypothetical protein VFG1612 Protein 6e-45 41