Gene Information

Name : fliQ (Hac_0105)
Accession : YP_663959.1
Strain : Helicobacter acinonychis Sheeba
Genome accession: NC_008229
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliQ
Function : -
COG functional category : N : Cell motility
COG ID : COG1987
EC number : -
Position : 95735 - 96001 bp
Length : 267 bp
Strand : -
Note : with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGGAATCACAGCTTATGAAACTCGCCATTGAGACTTATAAAATCACTTTGATAATTTCTTTACCGGTATTGTTAGTGGG
ATTAGTGGTGGGGTTATTGGTGAGTATTTTTCAAGCGACTACTCAAATCAATGAAATGACTTTGTCTTTTGTGCCTAAGA
TTTTAGCCGTGATTGGCGTGCTGATTTTAACCATGCCTTGGATGACTAACATGCTTTTAGATTACACCAAAACCTTAATC
AAGCTCATTCCTAAAATCATAGGCTAG

Protein sequence : 
MESQLMKLAIETYKITLIISLPVLLVGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVLILTMPWMTNMLLDYTKTLI
KLIPKIIG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 4e-04 42
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 3e-04 42
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 3e-04 42
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 2e-04 42
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 4e-04 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliQ YP_663959.1 flagellar biosynthesis protein FliQ VFG2339 Protein 8e-09 55
fliQ YP_663959.1 flagellar biosynthesis protein FliQ VFG0520 Protein 9e-05 42