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Name : serS (Hac_1740) Accession : YP_665435.1 Strain : Helicobacter acinonychis Sheeba Genome accession: NC_008229 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1516019 - 1517266 bp Length : 1248 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATTGATAGAAAACTTTTATTACAAGATTTTGATAAGGTGGCTCATTCTTTAAAAAAGCGTAACAGCGTGATAGATGA TGGGTTGGAGCGTTTGCGCGAAATCATCACGCATTATAAAAAACAACTCATTGAGTTAGAAAGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAATTTGGTATCAAAATGACTCAAAAAGTGGATGCAAGCGATCTCAAAAAAGAGCTAGAAAACAAT AAAATCAAGTTGAATGAGCTTTCCAAAAGCGTGAGCGAGTTGGAGCAAAAAATTGATTTAAAGCTTTCAATAATCCCTAA TCTAGTGGATGAAAAAACCCCTTTAGGCACAAGCGAAGAAGATAATATAGAAATTAAAAAAATCTTAACCCCAAGAGATT TCACTTTCACGCCTAAAGAGCATTTTGAACTCGCTCAAAAAAATGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCT AAAAGCCGTTTTTCAGTTATTAGGGGTTTTGGGGCCAAAGTTTATCGCGCGCTCATTCATTTAATGTTAGATTTTAATGA AAAAAATGGCTTTGAAATCATCTACACGCCGGCTTTAGTGAATGAAAAAATGCTTTTTGGGACTGGGCAATTACCCAAAT TCAAAGAAGATGTTTTTAAAATAGAAAATGAAAATTTGTATTTGATCCCCACCGCTGAAGTAACGCTCACCAATTTATAC AACGACACGATCATCAGCGTTGAAAAACTCCCGATTAAAATGACCGCACACACGCCTTGTTTCAGGAGCGAAGCAGGGAG TGCGGGAAAAGACACAAGGGGGATGATAAGACAACACCAATTTGATAAGGTGGAATTAGTGGCTATCACACACCCTAAAG AAAGCGATGTCATGCAAGAGTATATGCTAGAGAGCGCGAGTGGGATCTTAAAGGCTTTGGAATTACCTCATCGGTTTGTG CAATTATGCAGTGGGGATTTGGGTTTTAGTGCAAGTAATACGATAGATATTGAAGTGTGGTTGCCTGGGCAAAATTGTTA TAGAGAAATCAGCTCGGTGTCTAACACGAGAGATTTTCAAGCCAGGCGGGCTAAAATCCGCTTCAAGGAAAATCAAAAAA ACCAATTAGTGCACACTCTAAATGGCTCTTCTTTAGCGGTAGGAAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATCCACATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDRKLLLQDFDKVAHSLKKRNSVIDDGLERLREIITHYKKQLIELESLQAFQNKVSKEFGIKMTQKVDASDLKKELENN KIKLNELSKSVSELEQKIDLKLSIIPNLVDEKTPLGTSEEDNIEIKKILTPRDFTFTPKEHFELAQKNGWIDFESGVKLA KSRFSVIRGFGAKVYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIISVEKLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDVMQEYMLESASGILKALELPHRFV QLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLVHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-78 | 47 |
