Gene Information

Name : Patl_0644 (Patl_0644)
Accession : YP_660227.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 744779 - 745447 bp
Length : 669 bp
Strand : -
Note : PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_2786 response regulator

DNA sequence : 
ATGCGAATTTTACTGGTTGAAGATGATCGCTCTTTGAGCGATGCCCTAAGTCAATCTCTTCGCAGCGAAGGCTACGCTGT
CAATGGTGCCTGCACAGCAGCTCAAGCGTTATCAGCGTTGGCTACAGGGGAGTTCACCATAATGATCCTAGACTTAGGCT
TACCAGACATGGATGGCCTTGAAGTGCTACGCCAAGCCCATCGCAACAAACACAGCGTACCTACGCTCATTCTCACAGCC
AGAGACAGCATGACAGATAAAATCACAGGCCTAGATTCTGGTGCCGATGATTACCTTGCTAAACCGTTTGATATGCAGGA
GCTACTGGCACGTTTGCGAGTCATGGAACGACGATTAGGTACCGCTACAAGTTCGCTCATTAACATAGGCAATGTCGTGC
TTGATTTGGCGACGCATCAAGTCACAGCAGACAACAATGAGAAAGAGCTCTCACGCCGAGAATTCATGCTACTTAAGGCT
TTAATGGAAAATGCCGGACGTATTCAATCTAAGAGCCAGCTTGAAACAAAACTGTATGAGTGGGGTGATGAGCTATCGAG
CAATGCAATAGAAGTTCACATACACAATTTGCGTAAAAAGCTGCCTAAGGATTTCATTAAAACCATTCGCGGCGTAGGTT
ACAGCGTGACAAACCGCGTGAGCGCCTAA

Protein sequence : 
MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGLEVLRQAHRNKHSVPTLILTA
RDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLGTATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKA
LMENAGRIQSKSQLETKLYEWGDELSSNAIEVHIHNLRKKLPKDFIKTIRGVGYSVTNRVSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_0644 YP_660227.1 two component transcriptional regulator BAC0487 Protein 2e-39 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_0644 YP_660227.1 two component transcriptional regulator VFG0473 Protein 3e-43 47
Patl_0644 YP_660227.1 two component transcriptional regulator VFG1390 Protein 3e-31 41