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Name : Patl_4226 (Patl_4226) Accession : YP_663779.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Unknown Product : RNA binding S1 Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 5088632 - 5090959 bp Length : 2328 bp Strand : + Note : PFAM: RNA binding S1; SMART: Resolvase, RNase H-like fold; KEGG: pha:PSHAa2854 conserved protein with nucleic acid-binding protein-like domain (transcriptional accessory protein) DNA sequence : ATGATCATTGAAAAAATCGCGAGTGAACTTCAGGTAAAACCCACTCAAGTACAAGCTGCCGTCACCTTGTTAGATGAAGG CTCGAGTGTCCCTTTTATTGCTCGCTATCGTAAAGAGGCCACAAATGGCTTAGATGACATTCAACTCCGTCAGCTTGAGC AGCGTTTGATTTACCTGCGCGATATTAATGACAGACGTAACGTGATCCTCAAAACGATTGATGAGCAAGGCAAGCTTACA GACCAACTTAAGCGCAGTATTTTAAGCTGCGACAACAAGACCGAATTAGAAGATTTATACCTGCCTTACAAACCTAAGCG TCGCACTAAGGGGCAAATAGCCATCGAAGCAGGCTTACAGCCTCTTGCAGACACTTTATTTGCCGACCCGACCTTATCGC CTGAGTCTGAAGCCGCAAAGTTCATTGCTGCAGATAAGGGCGTAGCTGACGAAAAGGCAGCGTTAGAGGGGGCAAAATTC ATCTTGATGGAGAAATTTGCTGAAGATGCAGCATTGCTACAAAAAGTGCGCCAGTACTTAATGGAAAACGCTCATATCAA AAGCAGTGTGGTTAAAGGTAAAGAAAAAGAAGCGGCTAAATATTCAGATTACTTTGCGCACAGTGAACGCCTCAGTAAAA TACCATCGCACCGCTGCCTAGCCTTGTTTCGCGGCCGAAATGAGAACTTTCTGCAAGTATCAATGGATGCTGATCCGCAA AAAGAAGAATCAGACAAAAGCTCATTCGGTGAACACATCATTGCCCAGCATCTGGGTTTGAATTTTAGTAACCGTGCGGC GGATGCGTGGTTAGCGAGTGTCGTTCAGTGGACATGGAAAGTAAAAATTGCTCTTCACATGGAAACAGAATTGTTTGGTG TGATAAAAGAAAAAGCCGAACAAGAAGCAATTCAGGTGTTTGCTAAAAATTTAAATGACTTGTTGATGGCGGCGCCTGCT GGGGCGAAAACCACCATGGGTCTTGATCCCGGTTTACGTACCGGCGTAAAAGTGGCAATCGTTGATGCCACAGGTAAAGT GCTAGCCACCAGCACCATATTCCCCCATGTGCCGCAAAATTTGTGGGACAAAAGCCTGCGAACGCTAGGTATGCTGTGTA AGCAACACAAGGTGAAGTTAATCAGCATTGGTAACGGCACAGGTTCACGTGAAACAGACAAGCTCGCCGCAGAGGTTATT AAAGCTAACCCCGAACTGGGTTTGAGCAAAATTATGGTCAGTGAAGCAGGCGCATCGGTTTATTCGGCCTCTGAGCTGGC ATCAAATGAACTACCCGATATGGATGTGTCGCTTCGCGGCGCTGTATCCATCGCTAGGCGCTTACAAGATCCACTCGCAG AGCTGGTTAAAATTGAACCCAAAGCTATCGGTGTTGGTCAGTACCAACATGACGTAAGCCAAAGTAACTTGGGGCGCTCA CTTGACCGTGTTATTGAAGATTGTGTAAACGCCGTTGGCGTGGATTTAAACATGGCTTCGGCCGCGCTATTAAGTCATGT ATCAGGCTTAAACCGCACACTTGCCACCAACATCGTAAATTTCAGAGATACCAATGGCGCGTTTAGCAGTCGCAAAGACT TGTTAAAAGTAGAACGCTTAGGGCCAAAAGCCTACGAGCAAGCCGCTGGCTTTTTACGCATAGTAAATGGCACTAACCCG CTTGATGCCTCGGCAGTTCACCCTGAAGCTTACCCTGTGGTCCAAGCCATAGTGAGTAACTCAGGCAGTGCTGTTAATGA TTTAATTGGTAACACTGAGCTATTGAAAAAGCTTGAGCCGCAGCAATTTGTGGATGATTCATTCGGGTTGCCCACAGTGA CTGATATCATCAGTGAGCTACTTAAGCCAGGCCGAGACCCTCGTCCTGAATTCAAAACCGCCACCTTTAAAGAGGGCGTG TCGTCGCTTAACGATTTAAAAGAAGGCATGATTTTAGAGGGCGTAGTGAGCAACGTCGCTAATTTTGGCGCGTTCGTTGA TGTAGGTGTCCACCAAGACGGTTTAGTGCATATCTCGGCTATGACTGACAAATACATTTCTGACCCACGGGAAATCGTCA AAACCGGTGACATTGTTAAGGTCAAGGTAATGGAAGTAGATGTGGCGCGTAAGCGTGTGTCATTCACCATGCGCTTGAAT GACGATATCAGCGCCAAGCCGAATCAAAGCCGCGGCAACAGTGACAATAAACCTCGTCAAGGCAACAGGCCAAGTGGTAA GACTCAAAATAAGAAACCCGCACCTGCTTCTGCTAATCAAGCGATGGGCAATGCCTTTGCCGATGCCTTTGCCAAAGCGA AAAAATAG Protein sequence : MIIEKIASELQVKPTQVQAAVTLLDEGSSVPFIARYRKEATNGLDDIQLRQLEQRLIYLRDINDRRNVILKTIDEQGKLT DQLKRSILSCDNKTELEDLYLPYKPKRRTKGQIAIEAGLQPLADTLFADPTLSPESEAAKFIAADKGVADEKAALEGAKF ILMEKFAEDAALLQKVRQYLMENAHIKSSVVKGKEKEAAKYSDYFAHSERLSKIPSHRCLALFRGRNENFLQVSMDADPQ KEESDKSSFGEHIIAQHLGLNFSNRAADAWLASVVQWTWKVKIALHMETELFGVIKEKAEQEAIQVFAKNLNDLLMAAPA GAKTTMGLDPGLRTGVKVAIVDATGKVLATSTIFPHVPQNLWDKSLRTLGMLCKQHKVKLISIGNGTGSRETDKLAAEVI KANPELGLSKIMVSEAGASVYSASELASNELPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVSQSNLGRS LDRVIEDCVNAVGVDLNMASAALLSHVSGLNRTLATNIVNFRDTNGAFSSRKDLLKVERLGPKAYEQAAGFLRIVNGTNP LDASAVHPEAYPVVQAIVSNSGSAVNDLIGNTELLKKLEPQQFVDDSFGLPTVTDIISELLKPGRDPRPEFKTATFKEGV SSLNDLKEGMILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDKYISDPREIVKTGDIVKVKVMEVDVARKRVSFTMRLN DDISAKPNQSRGNSDNKPRQGNRPSGKTQNKKPAPASANQAMGNAFADAFAKAKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 59 |
