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Name : Patl_4002 (Patl_4002) Accession : YP_663556.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 4817020 - 4818867 bp Length : 1848 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: plu:plu4809 WblM protein DNA sequence : ATGAAACTCGATAGGCTGTTTTCACTGAGCTCTCGAGCTAAATTTTCACTGTCTGTTGGATGGGACTTAGGCGCATTGTT TGCAAGTATTTTGGTGGCATATTGGTTACGAATCGGTATCGAAGACTGGCATTTTGCTGCAAGTGAGTGGTTGGTCATCA TTTTGAATTGTATTTTCGCCTTGAGTCTTATGACGTTTTTCGGCCATTATCAACAAATGGTACGTTACATCGACTTACGC GCGATTTACCTTATTTTTATCGCGCTGAGTTTATCCGCCTTGTATTTATTTGCGGCGCGCTATGCCTTTCAGGCTTTTGT TCCCACCACGGTACCTTTCATCTATTTGACCTTGGCGATGTTCTTAATTGTCGCTCCACGGTTGCTGATACAAACCACTG TTCAAACACAAAATTATAAAATTCGTGAAAAATGTATTATCTTCGGCGCCTCTCAAGCAGGGCGCTCTTTAGCCCAAACG CTGCGTACGGGTAATGATTTGTTGCCCGTTGCATTTGTCGATGACAAGAAGCTTTTTCAAGGGAAGCAGGTGATGGGGTT GCAGGTGTTTGCTCGAGAAGATATCCCCGAGCTGGTTCGAAAGTATGGCGTCAACAAGATGTTGCTAGCCGTAAATAACT CATCCCATGGGCGCCGAAAAGAGCTTATCGCCGAGTTAGAACCCTTTGCCATTGAGCTGTTGAGTATCCCAAATATTCAA GATATTTTGTCGGGCAAACGAAAAATCGATGAGCTGCGGGAAATCAAGATTGAAGAACTGCTGGGACGCGAGCCTGTGCC ACCGATCGTTGAGTTACTGGATACCAATATCCGTCGCAAGCGGGTTATGGTGACGGGGGCTGGTGGGTCTATTGGCAGTG AACTGTGCCGACAAATCGCTATGTCTAACCCCGAGTCTTTAATATTATTTGAGTTATCAGAATTCAACTTATACCAAATT GAAGGTGAGCTTTCTAAGCTTTACCCTGATATTAAGATTGTTCCTATTTTGGCCAGTATTCAAGACAACGAAATACTACG AAGCGCCATTGACGCCCATAAAATACAAACTATCTACCACGCGGCAGCGTATAAACATGTGCCTATGGTGGAGTCGAATC CTTTGGCTGGGCTGCGTAACAACGTATTTGGCACCGCGAATGTAGCGCTAGCAGCCATAGAGTTTGATGTGGAAAAATTT GTACTGATTTCAACGGACAAAGCGGTGCGCCCCACCAATGTAATGGGCGCCACTAAGCGCTTTGCGGAATTGATCGTACA AGGTATTGCCGATCTCGAGTCTTCCACTCAGTTCGCCATTGTCAGATTCGGTAATGTCCTTGGCTCATCAGGCTCGGTTG TGCCCTTATTCACTCGGCAGATACAAGCAGGCGGTCCTATCACCGTTACCCACCCGGATATCATTCGCTTTTTTATGACC ATTCCAGAAGCCGCTCAACTGGTGATCCAAGCTGGGGCAATGGGAAAAAAAGGCGAAGTGTTTGTGTTGGATATGGGCGA CCCAGTGAAAATAGTCGATTTAGCGCAAAAAATGGCGCATTTGATGGGACATACGTTGAAGACTGAAACGCAGCCAGATG GAAATATAGAGCTTAAATTTTCCGGTTTACGACCAGGTGAGAAGCTCTATGAAGAATTATTAATTGACGATGCTGATACC ACTACAAAGCACCCCAGAATTATGGGCGCCGATGAGAGTAAATTGCCTTTCGAGGAAGTAGTGATGCTGCTAGACGAGTT GAATTATGAGTTGACCCAGCAAAATGAAGCTAAAGCGAAGGAAATCTTAATTGATGCGCCACTTGCTTATGCGCCAGCGG CGCATTAA Protein sequence : MKLDRLFSLSSRAKFSLSVGWDLGALFASILVAYWLRIGIEDWHFAASEWLVIILNCIFALSLMTFFGHYQQMVRYIDLR AIYLIFIALSLSALYLFAARYAFQAFVPTTVPFIYLTLAMFLIVAPRLLIQTTVQTQNYKIREKCIIFGASQAGRSLAQT LRTGNDLLPVAFVDDKKLFQGKQVMGLQVFAREDIPELVRKYGVNKMLLAVNNSSHGRRKELIAELEPFAIELLSIPNIQ DILSGKRKIDELREIKIEELLGREPVPPIVELLDTNIRRKRVMVTGAGGSIGSELCRQIAMSNPESLILFELSEFNLYQI EGELSKLYPDIKIVPILASIQDNEILRSAIDAHKIQTIYHAAAYKHVPMVESNPLAGLRNNVFGTANVALAAIEFDVEKF VLISTDKAVRPTNVMGATKRFAELIVQGIADLESSTQFAIVRFGNVLGSSGSVVPLFTRQIQAGGPITVTHPDIIRFFMT IPEAAQLVIQAGAMGKKGEVFVLDMGDPVKIVDLAQKMAHLMGHTLKTETQPDGNIELKFSGLRPGEKLYEELLIDDADT TTKHPRIMGADESKLPFEEVVMLLDELNYELTQQNEAKAKEILIDAPLAYAPAAH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-82 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Patl_4002 | YP_663556.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 4e-111 | 44 |
| Patl_4002 | YP_663556.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 6e-81 | 44 |
