Gene Information

Name : Patl_3871 (Patl_3871)
Accession : YP_663425.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Virulence
Product : XRE family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 4664383 - 4664595 bp
Length : 213 bp
Strand : +
Note : PFAM: helix-turn-helix motif; KEGG: tko:TK1339 predicted transcription regulator, containing DNA-binding HTH domain

DNA sequence : 
GTGGCAAATGTTCCAATCAAAAATAAGATCCGAGAGTTACGTTTTTTTGCTGATGAAATGACCCAAAAAGAGTTGGCAGA
ATTGGTCGGGGTGACCCGCCAAACGATCATGGCAATAGAAAAAAGTAAGTATTCACCAACTTTAGAGGTTGCCTTCAAAA
TTGCCGAAGTATTTGGTCAGTCGCTAGAAGAAGTTTTTCAATACGAAGGGTAA

Protein sequence : 
MANVPIKNKIRELRFFADEMTQKELAELVGVTRQTIMAIEKSKYSPTLEVAFKIAEVFGQSLEEVFQYEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 5e-07 46
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 3e-08 43
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 2e-08 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_3871 YP_663425.1 XRE family transcriptional regulator VFG2175 Protein 9e-09 43
Patl_3871 YP_663425.1 XRE family transcriptional regulator VFG2168 Protein 9e-09 43