Gene Information

Name : Patl_3734 (Patl_3734)
Accession : YP_663290.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Virulence
Product : redoxin
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG2077
EC number : -
Position : 4501061 - 4501555 bp
Length : 495 bp
Strand : -
Note : PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: hch:HCH_01604 peroxiredoxin

DNA sequence : 
ATGAGCACAGTGACTTTAAAAGGCAATCCATTTAATACCGTCGGCGCTTTACCAAGTGTTGGTGAAAGCGCGGCTGATTT
TCGTTTAGTGAAAACAGATCTATCTGAAACGACCTTAGCTGATTATAAGGGTTCACGCTTAGTTCTGAATATCTTCCCCT
CAGTCGATACCCCGACTTGTGCCATGTCTGTTCGTAAATTCAATGAGCAAGTGGGTAAGTTAGAGAACACCAAAGTGTTA
TGTGTCTCTGCGGATTTACCTTTTGCGGCCGCACGTTTCTGTGGTGCTGAAGGTATCGAAAACGTTGCTACAGGTTCAAG
TTTCAGAGGTACATTTGGCACTGACTATGGCGTTGAGTTTGTTGATGGGCCATTAACTGGCTTGTTGTCACGTAGTGTGG
TGGTACTTGATGAAAACGGAAAGGTTATTTATACCGAGCAAGTAACTGAAACGGCTGATGAGCCTGACTATGATGCGGCG
ATTGCTGCGTTGTAA

Protein sequence : 
MSTVTLKGNPFNTVGALPSVGESAADFRLVKTDLSETTLADYKGSRLVLNIFPSVDTPTCAMSVRKFNEQVGKLENTKVL
CVSADLPFAAARFCGAEGIENVATGSSFRGTFGTDYGVEFVDGPLTGLLSRSVVVLDENGKVIYTEQVTETADEPDYDAA
IAAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 9e-31 42
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 5e-31 42
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 6e-31 42
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 3e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_3734 YP_663290.1 redoxin VFG0087 Protein 1e-31 42