Gene Information

Name : Patl_3451 (Patl_3451)
Accession : YP_663007.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Unknown
Product : transposase, IS4
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4141105 - 4142313 bp
Length : 1209 bp
Strand : +
Note : PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase

DNA sequence :
ATGCGTGATATTCATATCTTACACGATTTGCTTAAAAAACAATGTCCTAATCTACATGCAAAACGCCTTTCCTCTTTGAT
GGTTGCCACACAATCTTTGCTAGATGGTCAGCAACTGTCGTTGACCGAATTAGGACGCAATATCTCAGGCTCCGTGGCCC
CGAAACACAACATTAAACGCATCGACAGGCTGCTTGGTAATAACAACCTACATAATGAACGGCTCGACATCTACCGTTGG
CACGCTCGCTTGCTTTGCGGTGCTAACCCCATGCCGGTTGTTCTTGTGGATTGGTCTGATGTGCGTGAGCAGCTCAGGCA
TTTAACCTTACGTGCATCGGTCAGTGTTCAGGGGCGCTCTGTCACGCTTTATGAGCGCGTATTTTCATTCGGTGAATACA
ATTCACCTGTTAGTCATAATCCGTTTTTACGGGAGTTGGCGAGTATCCTGCCGTCGGGTTGTTGCCCGTTGATTGTGACC
GATGCAGGCTATCGTAACCCTTGGTTTCGTGAAGTCGAAAAGCATGGATGGTTCTGGCTAGGCCGAGTGCGCGGTGATGT
GGGATTTAAGCGTGATGGGCAAGCATCATGGCAAAGTAATAAGTCGTTTTATCCCAGTGCAAATTCTCGGGCCAAATACC
TTGGGTGTGGGCAATTAGGGCGTAAAAGCCCGCTTCATGCACACCTGCATTTGTACAAAGCAAAGGCCAAACATCGAAAG
GACAACCGTTCTTCAAAGGCAGGTCGAAACCACACCGCCCAGCAAAGCTATCGTGCCGGTAGCAAAGAGCCTTGGCTACT
CGCCACTAACCTTCCCGAGAACGATAAACTTAACTCAAAACAGCTGGTTTCCCTTTACGCAAGACGGATGCAAATAGAAG
AAACCTTCCGCGATATTAAAAGCCCTCAATACGGAATGGGACTGCGCCACAGCAACAGTCGCTGTACCAAACGATTCGAC
ATATTACTGCTGATAGCGATGCTCGCAGAATGGCTATTACGGTTACTCGGTATCATTGCTCAAAAACAAAATTGGGAAAG
AGCATTTCAAGCTAACACCATCCGTCATCGGCGCGTGTTATCTATCATTAGGCTAGGCAGAGAAGTCAGGAAAAGGGCAA
AAGATTACAGGATGAACTCAGCTCAAATGACATGGGCTATCGCCCAATATATTACCTGGGTTCACAAAGAAGGGAGACCA
ATTCTATGA

Protein sequence :
MRDIHILHDLLKKQCPNLHAKRLSSLMVATQSLLDGQQLSLTELGRNISGSVAPKHNIKRIDRLLGNNNLHNERLDIYRW
HARLLCGANPMPVVLVDWSDVREQLRHLTLRASVSVQGRSVTLYERVFSFGEYNSPVSHNPFLRELASILPSGCCPLIVT
DAGYRNPWFREVEKHGWFWLGRVRGDVGFKRDGQASWQSNKSFYPSANSRAKYLGCGQLGRKSPLHAHLHLYKAKAKHRK
DNRSSKAGRNHTAQQSYRAGSKEPWLLATNLPENDKLNSKQLVSLYARRMQIEETFRDIKSPQYGMGLRHSNSRCTKRFD
ILLLIAMLAEWLLRLLGIIAQKQNWERAFQANTIRHRRVLSIIRLGREVRKRAKDYRMNSAQMTWAIAQYITWVHKEGRP
IL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
IS1999 CAJ77042.1 Insertion sequence Not tested AbaR1 Protein 2e-100 53
tnp AEA34664.1 IS10 transposase Not tested Not named Protein 4e-96 52
IS10 CAI43894.1 transposase for IS10 Not tested LEE Protein 1e-96 52
SF2983 NP_708757.1 iso-IS10R ORF Not tested SHI-1 Protein 3e-96 52
tnp AEA34674.1 IS10 transposase Not tested Not named Protein 8e-96 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_3451 YP_663007.1 transposase, IS4 VFG0647 Protein 1e-96 52