Gene Information

Name : Patl_3398 (Patl_3398)
Accession : YP_662958.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Resistance
Product : ArsR family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG0640
EC number : -
Position : 4072775 - 4073119 bp
Length : 345 bp
Strand : -
Note : PFAM: regulatory protein, ArsR; KEGG: pha:PSHAb0181 putative arsenic resistance operon regulator

DNA sequence : 
ATGTCTACCCCTATTTTGTCACCCTTGTCGTTTTACAAATGTTTGTCAGATGACACGCGCCTTAAAGCACTGATGTTGAT
CTATCTTGAAAAAGAATTGTGCGTGTGCGATCTCATTACGGCGCTAGAGTTGAGCCAGCCTAAAGTGTCACGCCATCTCG
CTGATTTGCGTAAATGTCATATTCTGCTTGATGAGCGTCGAGGAAAATGGGTGTACTACTCGGTTAACCCTAAATTGCCA
GAATGGGCGATGAAAGTCCTTGAATTGACCGCACACAACACAGAAGCCTATTTGAATGACAACATCACCAATTTGAACAT
GGCCAAGCAAAGCGAGTGTTGTTAG

Protein sequence : 
MSTPILSPLSFYKCLSDDTRLKALMLIYLEKELCVCDLITALELSQPKVSRHLADLRKCHILLDERRGKWVYYSVNPKLP
EWAMKVLELTAHNTEAYLNDNITNLNMAKQSECC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsR AFC76435.1 ArsR Not tested AbaR5 Protein 2e-20 55
arsR CAJ77018.1 arsenite inducible repressor Not tested AbaR1 Protein 1e-20 55
arsR2 YP_001007630.1 DNA-binding transcriptional repressor ArsR Not tested YAPI Protein 2e-17 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_3398 YP_662958.1 ArsR family transcriptional regulator BAC0591 Protein 1e-17 55
Patl_3398 YP_662958.1 ArsR family transcriptional regulator BAC0594 Protein 1e-17 51
Patl_3398 YP_662958.1 ArsR family transcriptional regulator BAC0588 Protein 3e-16 47
Patl_3398 YP_662958.1 ArsR family transcriptional regulator BAC0589 Protein 2e-18 46