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Name : Patl_3263 (Patl_3263) Accession : YP_662823.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 3911681 - 3914350 bp Length : 2670 bp Strand : + Note : TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS-like MutS III MutS II MutS IV; KEGG: stm:STM2909 DNA mismatch repair protein mutS DNA sequence : ATGCCAAAAACAAATTCATCAGCAGCGTCAACAAACGCTAATCCCTCATCTTTGCAGCAGCATACGCCTATGATGCAGCA GTATTTGAAAATTAAAGCTGAACATCCTGATATTCTATTGTTTTATCGCATGGGAGATTTTTATGAATTGTTCTTTGACG ATGCTAAAAAAGCCGCCGAACTACTCGATATCTCCCTAACTGCCAGGGGGAAATCAGGCGGCAATGCCATCCCTATGGCA GGCGTTCCTTATCATGCGGTAGAAAATTATTTGGCTCGACTAGTGAAAATGGGCCAGTCAGTCGCTATCGTCGAACAGGT GGGTGACCCCGCAACCAGCAAAGGGCCTGTTGAGCGAAAAGTGCAACGTATTGTTACCCCAGGTACAGTATCAGACGAGG CACTCCTTAATGATAAACAAGACAGTATATTAGCCGCAGTTTTTTGCCCCACGCAAAAAGCAAATCAAGAATTGATATTC GGGTATGCCACCTTAGATGTAACCAGCGGTCGCTTTACGCTATGTGAGCTCAGTGGTGAGGAAGCTCTCGCTGCCGAGTT ACAACGCACGAATCCTGTCGAGCTTTTATACCCTGACGATTTTGCCTACAGTCATCTTATCAATCAGCGAAAGGGTTTAC GCCGTCGCCCGCAGTGGGAGTTCGATTTACAAACCGCCACTAACCAGCTTACTAGCCAGTTTGGTACCAATGAGCTATCT GGTTTTGGCGTGCAAAACCACCAAGTCGGTATTTGTGCTGCAGGTTGCGTAATGCAATATATCAAAGACACCCAGCGCTC AGCCCTGCCCCACATTGACCGAATAGTGCTTGAATCCCACAACGACACAGTCGTGATGGACGCCGCCACACGGCGTAACT TAGAGCTAACGTTTAATTTATCTGGTGGTATTGAAAACACGCTCGCGAGTATTCTTGATAAAACCTCAACGCCTATGGGC AGTCGTTTGTTGCAACGATGGATCCACCGTCCGTTAACAGATGTCACCGTGCTTAAAAAACGTCAACGAAATATTCAAGG GTTGATGGAGTCACCCTATACCCAGTTACAAAGTGCCCTGAAAAAAATAGGTGACATGCAGCGCGTGTTAGCAAGGCTTG CGCTGCGCAGTGCTCGTCCGCGGGATTTTGCCCGCCTGCGCCAAGCCTTTGCACTATTGCCAGATATACAACATTATCTT GAGCACGAAATTAGTCATACTAGCGAAAGCGCTCAGCCAAGCGATTTACTTCACTTGGCAGAAAAAATCAGTCAATACCC TGACTTCGCAGACTTGTTAGAACGTGCAGTCATTGAAGCCCCCCCAGTATTAATCCGCGATGGTGGGGTCATAAAAGAAG GTTACAACGAAGAGCTTGATCGCCTACGTGAACTGTCAAAAGGGGCGACCGACTATTTAGAAGAATTAGAGCTACGCGAA AAAGAGCGTACTGGCATCGCGAGCCTCAAAGTGGGCTACAACCGAGTGCATGGTTACTTTATTGAAGTCAGCCGCAGTCA ATCTGACCTCGTGCCTGTAGAGTATGTTCGTCGCCAAACGCTGAAAAATAACGAACGTTACATTATCCCAGAACTCAAAG AGCACGAAGACAATGTGCTTAGCAGCCAAAGTCGCTCATTAGCCCTTGAAAAGCGCTTATACGATGAGCTTTTCGATTTA CTCTTACCGCAATTAACACAACTAATGCAAAGTGCTGATGCACTAGCAGAATTAGATGTACTCACTAATTTAGCCGAGCG CGCTGAAAGCCTTGATTATCACCGCCCAGAATTATGCCCCCAAAGCGGCATTCACTTTAGTCAAGGTCGCCACCCTGTTG TAGAGCAGGTATCAGATGCCCCCTTTATCGCCAACCCAATTAACGTTAACCCAGATCGCAGAATGTTGGTGATCACCGGC CCGAACATGGGCGGTAAATCAACGTACATGCGTCAAACCGCCCTCATCGTGTTGATGGCCTATATCGGCAGCTATATACC TGCGCAAGATGCTCAGATTGGCCCGATAGACCGCATATTTACCCGCATTGGTGCTTCCGACGATTTAGCCTCTGGCCGAT CCACCTTCATGGTAGAAATGACCGAAACCGCTAACATTTTGAACAACGCCACGGCGAATAGCTTGGTATTAATGGATGAA ATTGGCCGAGGTACCAGTACCTATGATGGCCTTTCTTTAGCGTGGGCCTGCGCTGAGTATTTAGCGACCAAGCTGCAGTC TTTCACCTTATTTGCTACCCATTACTTCGAGTTAACAGGGCTAGCGGATGCATTGCCAGAGTTAGCCAATGTGCATCTAG ATGCCGTTGAGCACGGTGAAAGCATTCGTTTTATGCACGCAGTGCAAGATGGTGCAGCCAATAAAAGCTATGGTTTGCAA GTAGCTCAACTCGCAGGCGTGCCGAAATTAGTGGTACAAGCGGCTAAACGCAAATTACATGAACTTGAAACGGGTGATAT TTCCAAACAAGGTCGACAAGAGACATCGCCAGTCAATACAGTTTATGCAACAGAAAAAGTAGAGACGCAGCTGGACTTGC TCAGTCAGACAAGCGAAGCCGAAGACTTACTGCACAGTATTCAGCCCGATGATTTAACGCCTAAGCAGGCCCTTGATTAC TTGTACCAACTAAAAAAATTGGTTCGATAA Protein sequence : MPKTNSSAASTNANPSSLQQHTPMMQQYLKIKAEHPDILLFYRMGDFYELFFDDAKKAAELLDISLTARGKSGGNAIPMA GVPYHAVENYLARLVKMGQSVAIVEQVGDPATSKGPVERKVQRIVTPGTVSDEALLNDKQDSILAAVFCPTQKANQELIF GYATLDVTSGRFTLCELSGEEALAAELQRTNPVELLYPDDFAYSHLINQRKGLRRRPQWEFDLQTATNQLTSQFGTNELS GFGVQNHQVGICAAGCVMQYIKDTQRSALPHIDRIVLESHNDTVVMDAATRRNLELTFNLSGGIENTLASILDKTSTPMG SRLLQRWIHRPLTDVTVLKKRQRNIQGLMESPYTQLQSALKKIGDMQRVLARLALRSARPRDFARLRQAFALLPDIQHYL EHEISHTSESAQPSDLLHLAEKISQYPDFADLLERAVIEAPPVLIRDGGVIKEGYNEELDRLRELSKGATDYLEELELRE KERTGIASLKVGYNRVHGYFIEVSRSQSDLVPVEYVRRQTLKNNERYIIPELKEHEDNVLSSQSRSLALEKRLYDELFDL LLPQLTQLMQSADALAELDVLTNLAERAESLDYHRPELCPQSGIHFSQGRHPVVEQVSDAPFIANPINVNPDRRMLVITG PNMGGKSTYMRQTALIVLMAYIGSYIPAQDAQIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATANSLVLMDE IGRGTSTYDGLSLAWACAEYLATKLQSFTLFATHYFELTGLADALPELANVHLDAVEHGESIRFMHAVQDGAANKSYGLQ VAQLAGVPKLVVQAAKRKLHELETGDISKQGRQETSPVNTVYATEKVETQLDLLSQTSEAEDLLHSIQPDDLTPKQALDY LYQLKKLVR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 0.0 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Patl_3263 | YP_662823.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 0.0 | 64 |
