Gene Information

Name : Patl_3239 (Patl_3239)
Accession : YP_662799.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 3888808 - 3889458 bp
Length : 651 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: ATPase; KEGG: cjr:CJE1620 capsular polysaccharide ABC transporter, ATP-binding protein

DNA sequence : 
ATGATAAGGCTGGAAAACCTAACTAAATACTACCCCTCACATTTGGGTAAGCAGTATATTTTTAAGGATCTCAGTTTTGA
TATTCCCTCAGGCCATAACATTGGCATACTGGGTTCAAATGGGGCGGGCAAATCAACCTTATTCAGATTATTGGCAGGAA
GCGAATACCCCAACAAAGGAAAAGTTTTAACCGATCTTAGTTTATCTTGGCCTGTGGCGTTAACCACAGGAATACATCAA
CAAATGACCGGGCGCGAAAATACCCGTTTTATTGGCAAGGTAAATGGTATCGCAGACTTAGATACTTACGAACGCAGAGT
CAGAGAATTTGCGGAGCTAGGGGATAAGTTCGATCTTCCGGTAAGAAGTTACTCCAGTGGCATGAAACCACGTCTTGCAT
TCGCCTGTTCAATTGCAATTGATTTTGACGTCTACCTCATTGATGAAGTGACCTCGGTAGGGGATGCCAAATTCCGTAAA
AAAGCCAGAAAAGCACTGTTAGAGCGCAGCGAAACTGCAAACGTTGTTATGGTCAGCCATGAAATGAACGAAATCAGACA
ATTTTGCGACAGCGCTATTGTGTTACACAAGGGTGAACTAACTTTTTACAATGATCTCGAGGAAGGGATCAAACAATATC
AGGCGTTATAA

Protein sequence : 
MIRLENLTKYYPSHLGKQYIFKDLSFDIPSGHNIGILGSNGAGKSTLFRLLAGSEYPNKGKVLTDLSLSWPVALTTGIHQ
QMTGRENTRFIGKVNGIADLDTYERRVREFAELGDKFDLPVRSYSSGMKPRLAFACSIAIDFDVYLIDEVTSVGDAKFRK
KARKALLERSETANVVMVSHEMNEIRQFCDSAIVLHKGELTFYNDLEEGIKQYQAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-42 45
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 3e-36 43
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 4e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_3239 YP_662799.1 ABC transporter-like protein VFG1449 Protein 7e-43 45
Patl_3239 YP_662799.1 ABC transporter-like protein VFG0258 Protein 1e-36 43
Patl_3239 YP_662799.1 ABC transporter-like protein VFG2563 Protein 1e-36 43
Patl_3239 YP_662799.1 ABC transporter-like protein VFG0696 Protein 7e-38 41