Gene Information

Name : lspA (Patl_3177)
Accession : YP_662737.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Unknown
Product : lipoprotein signal peptidase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0597
EC number : -
Position : 3819399 - 3819893 bp
Length : 495 bp
Strand : -
Note : lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis

DNA sequence :
ATGCTTAATTTATTTAGACAAAGCGGTCTGCGCTTTTTGTGGTTAGCCGTGGTGGTGTTTGTCATCGATCAGGTTACTAA
GCACTGGATCGTGGCGAATTTAGAGCCGTACCAAGCGATTCAGTACACCTCTTTTTTTAACTTAACTCACGTGTACAACT
ACGGGGCAGCATTTAGCTTTTTAAGTGATGCTGGTGGTTGGCAACGTTGGTTATTCACAGGTATTGCTATCGCCGTATGT
GGTTTAGTCACCTGGTGGTTAAAAGAAACCACCCGCCAACAGGTTATGTTGCCTGTGGCGTTTTGTTTGATTATTGGTGG
CGCGCTCGGCAATGTGTTTGACCGTTTATTACACGGTTTTGTTATCGATTTCTTAGTGCTTTATTACCAAGATTGGTATT
GGCCTGCGTTTAACGTAGCTGATAGCGCAATCTGCTTAGGCGCGTTTTTACTAGTCATAGATATGTTTAAAAATAAGGAC
AATGTAAATGAGTGA

Protein sequence :
MLNLFRQSGLRFLWLAVVVFVIDQVTKHWIVANLEPYQAIQYTSFFNLTHVYNYGAAFSFLSDAGGWQRWLFTGIAIAVC
GLVTWWLKETTRQQVMLPVAFCLIIGGALGNVFDRLLHGFVIDFLVLYYQDWYWPAFNVADSAICLGAFLLVIDMFKNKD
NVNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lspA AAN62189.1 putative lipoprotein signal peptidase LspA Not tested PAGI-2(C) Protein 2e-23 46
lspA ADI24143.1 lipoprotein signal peptidase Not tested AbaR1 Protein 9e-17 43
lspA ACS32043.1 lipoprotein signal peptidase Not tested AbaR5 Protein 1e-16 43
lspA CAJ77023.1 lipoprotein signal peptidase Not tested AbaR1 Protein 9e-17 43
lspA ADZ05771.1 lipoprotein signal peptidase Not tested AbaR11 Protein 2e-18 41
lspA AGK36655.1 lipoprotein signal peptidase Not tested AbaR26 Protein 2e-18 41
ACICU_00236 YP_001844895.1 lipoprotein signal peptidase Not tested AbaR20 Protein 3e-18 41
lspA ACN81031.1 lipoprotein signal peptidase Not tested AbaR5 Protein 3e-18 41
lspA CAJ77096.1 Lipoprotein signal poeptidase Not tested AbaR1 Protein 2e-18 41