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Name : fliP (Patl_3037) Accession : YP_662597.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 3667935 - 3668690 bp Length : 756 bp Strand : - Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : ATGAATAAGATTTTTTTACTGCTATTGGCGACGGGACTATTAATGGTTCCTAGTTGGGTTCTTGCCGAGCCCGGTATCCC CGCGCTGACCATGACTGAAAACGCGGATGGCTCGCAAGATTACACCATGACATTGCAAGTGGTGGCGATCATGACTGCGC TGAGCTTGTTGCCTGCATTTATTATGATGATGACGTCTTTCACTCGTATCATCATCGTACTCTCTATTTTGCGTCAAGCG ATTGGTTTGCAACAATCCCCTTCCAACCAAATATTGATAGGCGTGAGCTTATTCCTGTCTATGTTTATCATGGCGCCAGT GTTTGAAAAAATTAATGAAACAGCGCTGCAGCCATACTTAAGTGAACAAATCACCTCGATACAAGCTTACGAACTAGCCA AAGAGCCGTTGCGGGGTTTTATGCTGGCACAGACGAGAATAAAAGATTTAGAAACATTTGTGGAAATAGGCGGCTATGAA GATCAGTTTCAAGAGCCAGCCGATGTGCCAATGAATGTGCTGATACCCGCTTTTGTCACTAGCGAATTGAAAACCGCGTT TCAAATCGGTTTTATGTTGTTCATTCCATTTCTTATTTTGGACTTGGTGGTAGCGTCAATCCTCATGGCTATGGGGATGA TGATGTTATCGCCTATGATCGTTTCGCTGCCCTTCAAGCTAATGTTGTTCGTGTTGGTGGATGGTTGGAACCTTATTTTT GGCACACTAGCAAACAGCTTTGGAATGGGGACTTAG Protein sequence : MNKIFLLLLATGLLMVPSWVLAEPGIPALTMTENADGSQDYTMTLQVVAIMTALSLLPAFIMMMTSFTRIIIVLSILRQA IGLQQSPSNQILIGVSLFLSMFIMAPVFEKINETALQPYLSEQITSIQAYELAKEPLRGFMLAQTRIKDLETFVEIGGYE DQFQEPADVPMNVLIPAFVTSELKTAFQIGFMLFIPFLILDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIF GTLANSFGMGT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 4e-24 | 42 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 4e-24 | 42 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 1e-23 | 42 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 5e-24 | 42 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 5e-24 | 42 |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 4e-25 | 41 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 3e-25 | 41 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 4e-25 | 41 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 4e-25 | 41 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 4e-25 | 41 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 4e-25 | 41 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 8e-26 | 41 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 6e-24 | 41 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 1e-23 | 41 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 6e-24 | 41 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 4e-24 | 41 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 4e-24 | 41 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 4e-24 | 41 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 4e-24 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_662597.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 2e-64 | 67 |
| fliP | YP_662597.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 3e-57 | 61 |
| fliP | YP_662597.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 6e-51 | 54 |
| fliP | YP_662597.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 1e-47 | 52 |
| fliP | YP_662597.1 | flagellar biosynthesis protein FliP | VFG0827 | Protein | 2e-24 | 42 |
| fliP | YP_662597.1 | flagellar biosynthesis protein FliP | VFG0715 | Protein | 8e-24 | 41 |
