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Name : Patl_2863 (Patl_2863) Accession : YP_662425.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Virulence Product : TRAP dicarboxylate transporter subunit DctM Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1593 EC number : - Position : 3472497 - 3473783 bp Length : 1287 bp Strand : + Note : TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bcl:ABC4044 TRAP-type transport system permease large protein DNA sequence : ATGTCTATCAGTTATTTTTGGGTTTTCATTCTATTACTCACTGCTGGCACGCCAGTGGTGTTTGCCTTGTTAATTGGTCC TGGCGTCAGTTTAATGCTTGACGGTAACGAGGTGTTTTTCTCAGCATTGTTAACCCGTTTGTACTCAGGGATGAATTCGT TCCCTTTGATGGCGGTACCGTTTTTCATCTTAGCTGGTGAGCTGATGAATCAAGGCGGGATCACTCAGTCTATTGTGCGC TTTAGCCAAACCTTAATAGGGCATTACAGAGGCGGCTTAGCACAAGTGAATATTTTATCGTCAGTGCTTTTCGCAGGGCT ATCAGGCTCAGCGGTTGCCGACACCTCTGCGTTAGGTAAAATGCTTATCCCCGCTATGGAAGAAAACGGCTACAGCAGAC GCTTTGCCGCTGCAGTGACGGCCGCTTCTTCTGTTATCGGCCCGATTATTCCCCCCTCAGGGATCATGATCTTGTACGCT TTTATCATGAACGTATCTGTGGCGGGCATGTTCTTAGCAGGCATTACCCCGGGCTTATTGATTTGTGCTGGTTTGATGAT AGTCACCAGCCGAATAGCCAAAAAACGTAACTACCCAGTAGCAAATCAAAAAGCGACTTGGTACGAACGTGGCAGTGCCC TTAAATCGTCCTTTTTACCCTTACTTACCCCCGTTATTTTACTTGGCGGGATCGTATTAGGTGTATTCACCCCAACAGAA GCGGCCGCAGCAGCAGCGGGTTATGCACTGATCGTTACCTTATTTGTGACCAACACCCTTAAATTCCACAAGCTGCCGCA CATACTTGTTAACGCAGCCGTGCAATCAGGAACAATTTTATTACTGGTCGGCTCGGCGGTAACCTTCGCCTGGATCATTA CCGTGTCCGGTATGGCTGATATGTTAGCCGAACAAATCGTCGGCATAACCGACAACGTATTGTTGTTGCTGCTGATCATT AACTTATTCTTATTCGCCATCGGAATGTTTCTAGATGCAGGCCCAGCGATCTTGATCCTCGGCCCTGTGCTAGCGCCTAT TTTTATCTCGCTAGGCATCGACCCTCTACATTTTGCGGTGATCATGTGCGTGAACTTAACGGTTGGCTTAGCAACCCCCC CTATGGGCTTGGTGCTATTTGTGGCTGCGTCCGTATCCGGCGAAAAAACCGAAAATATTGCCTACGAAATGCTGCCATTT TTAGCAGTTGAAGCCTTGGTGATTTTTATTATTACCTATTTCCCTGCGGTCACTATGACCTTACCTCGTCTGTTTGGGTT TGCTTGA Protein sequence : MSISYFWVFILLLTAGTPVVFALLIGPGVSLMLDGNEVFFSALLTRLYSGMNSFPLMAVPFFILAGELMNQGGITQSIVR FSQTLIGHYRGGLAQVNILSSVLFAGLSGSAVADTSALGKMLIPAMEENGYSRRFAAAVTAASSVIGPIIPPSGIMILYA FIMNVSVAGMFLAGITPGLLICAGLMIVTSRIAKKRNYPVANQKATWYERGSALKSSFLPLLTPVILLGGIVLGVFTPTE AAAAAAGYALIVTLFVTNTLKFHKLPHILVNAAVQSGTILLLVGSAVTFAWIITVSGMADMLAEQIVGITDNVLLLLLII NLFLFAIGMFLDAGPAILILGPVLAPIFISLGIDPLHFAVIMCVNLTVGLATPPMGLVLFVAASVSGEKTENIAYEMLPF LAVEALVIFIITYFPAVTMTLPRLFGFA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VPI2_0025c | ACA01842.1 | TRAP dicarboxylate transporter DctM subunit | Not tested | VPI-2 | Protein | 3e-57 | 42 |
| VC1777 | NP_231412.1 | hypothetical protein | Not tested | VPI-2 | Protein | 3e-57 | 42 |
| VC0395_A1375 | YP_001217318.1 | hypothetical protein | Not tested | VPI-2 | Protein | 3e-57 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Patl_2863 | YP_662425.1 | TRAP dicarboxylate transporter subunit DctM | VFG1110 | Protein | 1e-57 | 42 |
