Gene Information

Name : Patl_2776 (Patl_2776)
Accession : YP_662341.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3368833 - 3369555 bp
Length : 723 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: ATPase; KEGG: gme:Gmet_3037 ABC transporter-related protein

DNA sequence :
ATGTCGCAACCGTTGCTAAAAGTACGACAGGCGAAAAAGGTTTATACCATGGGGGATGAAAAGGTATGGGCGCTAAAAGG
TGTTGATTTAGATATTCATCAAGGTGAATTTGTGGCCATCATGGGCAGCTCTGGCTCAGGTAAATCTACCATGATGAATT
TGCTCGGGTGTTTAGATATTGCCAGTGAAGGCAGTATTGCTTTTGCGGGCCAAGAATTATCAACCCTAAGTAAAAATGAA
TTGGCCAGCGTGCGCAATCAGCGTATTGGCTTTGTGTTTCAGCAATTTAATTTATTACCCAGAACCAGTGCCTTAGACAA
CGTCACTTTGCCACTGTTGTATAGCAAAGTGCCAGAAGCAGATTGGCACTCGCGTGCTCGGCAATGCCTTGAAAGCGTTG
GGCTTGCGTCACGTATGGATCATCATCCTGGGCAACTTTCAGGTGGCCAACAACAGCGAGTAGCGATTGCGCGTGCACTG
ATCAACGACCCGTTGATGATATTGGCTGATGAGCCTACAGGTGCCCTTGATACGCAAACGGGCTTAGAAGTGATGGCGCT
TTTTCAAGGGCTTAATCAACAAGGAAAGACCATTATCTTGGTGACCCACGAGCCGGAAATTGCTCAATTTGCTAAGCGTA
AACTGACTTTTCGCGATGGAGAGCTCATCAGTGACGAGCAAAATACCAATGTGCGTCAGGCGGCGTTAGAGGGCAACGTA
TGA

Protein sequence :
MSQPLLKVRQAKKVYTMGDEKVWALKGVDLDIHQGEFVAIMGSSGSGKSTMMNLLGCLDIASEGSIAFAGQELSTLSKNE
LASVRNQRIGFVFQQFNLLPRTSALDNVTLPLLYSKVPEADWHSRARQCLESVGLASRMDHHPGQLSGGQQQRVAIARAL
INDPLMILADEPTGALDTQTGLEVMALFQGLNQQGKTIILVTHEPEIAQFAKRKLTFRDGELISDEQNTNVRQAALEGNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-32 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-32 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 5e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_2776 YP_662341.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-54 54
Patl_2776 YP_662341.1 ABC transporter-like protein NC_008702.1.4606598. Protein 2e-45 52
Patl_2776 YP_662341.1 ABC transporter-like protein CP001581.1.gene798.p Protein 2e-35 43
Patl_2776 YP_662341.1 ABC transporter-like protein CP001581.1.gene598.p Protein 3e-35 41
Patl_2776 YP_662341.1 ABC transporter-like protein NC_012469.1.7686946. Protein 3e-23 41