|
Name : Patl_0251 (Patl_0251) Accession : YP_659837.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : - Position : 292531 - 293967 bp Length : 1437 bp Strand : - Note : KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase-like; SMART: ATPase DNA sequence : TTGGCGCATACTAGCCACCTGTTCTTGAGGATAAATGTACCTTCTGTGAAAGCCGTTTCAGCAAAAAATAAAGATCAAAA AGTCGAAAAACTTAAAGTTCCTCCGCATTCCATTGAAGCAGAGCAATCTGTGCTGGGCAGTATGTTGATCGCACCTGACT CCTGGGATAAAGTCGCTGAACTTGTCACCGAGGAAGACTTTTACAACCGCTCCCATCAGGTCATTTATGGCGCGATTCTG CGCTTATTGAAAAACAACCATCCAATCGATTTAATCACTGTTTCAGAAGATTTAGAGAATCTAGACGAGCTTGAAGAAGC AGGCGGTTTCGCTTATTTAGGCGAGTTAGCGAAAAATACGCCAAGTGCTGCTAACGTCACGGCCTATGCCAATATTATAA AAGAGCGCGCCGTCGTTAGAGAGCTAATTGGTGTGGCTCACGATATCGCCGATGTTGGTTATAATCCCGAAGGCCGAAAT AGCGGCGAATTACTCGATATGGCGGAAAGTCGAGTTTTTGAAATTGCGGAAAAGCGAACCGCAAAAAACGAAGGTCCACG AGGCATTGAGTCCGTACTAACAAAAACCATTGACCGCCTTGAAGAGTTAGTTAAAAACAATAAAGAAGTGACTGGTGTCT CTACCGGATACACTGATTTAGATAAGAAAACCAGTGGGTTACAACCTTCAGATTTGATAATAGTTGCCGCGCGTCCTTCC ATGGGTAAAACCACGTTCGCTATGAACTTGTGTGAAAACGCTATGTTATTGGAAGAAAAGCCAGTTTTGGTATTCAGCTT AGAGATGCCCGCCGAACAGATCATGATGCGTATGCTTGCCTCACTGAGCCGCGTAGATCAAACCAAAATTCGTACCGCTC AATTAGATGATGAAGATTGGGCCCGCATGTCTAACACTATGGCCATGCTCAAAGACAAAGATAACTTATACGTCGATGAC TCATCCGGTCTGACACCAATGGAAGTGCGTACGCGTGCGCGTAAATTGGCGCGCGATCGCGGTGGTATTAGCCTGATTAT GATCGATTACCTGCAATTGATGCAGGTGCCGGGCTTGAGTGATAACCGTACTTTAGAAATCGCCGAAATTTCTCGCTCGT TAAAGTCTCTAGCAAAAGAGCTCGAAGTGCCGGTCGTTGCACTTTCGCAGCTAAACCGTGGACTAGAGCAGCGTTCAGAT AAACGCCCCATTAACTCGGATTTGAGGGAATCAGGGTCTATTGAGCAAGATGCCGATTTGATCATGTTTATTTATCGAGA CGAAGTGTATAACGAAGGCAGTGAGGACAAAGGCGTGGCTGAGATCATTATTGGTAAACAGCGTAACGGCCCTATCGGTA CATCAAGACTTACCTTCCAAGGTCAGTTTTCTCGATTTGACAATTATGCTGGGCCGCCCAGGGACGACGAGTATTAA Protein sequence : MAHTSHLFLRINVPSVKAVSAKNKDQKVEKLKVPPHSIEAEQSVLGSMLIAPDSWDKVAELVTEEDFYNRSHQVIYGAIL RLLKNNHPIDLITVSEDLENLDELEEAGGFAYLGELAKNTPSAANVTAYANIIKERAVVRELIGVAHDIADVGYNPEGRN SGELLDMAESRVFEIAEKRTAKNEGPRGIESVLTKTIDRLEELVKNNKEVTGVSTGYTDLDKKTSGLQPSDLIIVAARPS MGKTTFAMNLCENAMLLEEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTAQLDDEDWARMSNTMAMLKDKDNLYVDD SSGLTPMEVRTRARKLARDRGGISLIMIDYLQLMQVPGLSDNRTLEIAEISRSLKSLAKELEVPVVALSQLNRGLEQRSD KRPINSDLRESGSIEQDADLIMFIYRDEVYNEGSEDKGVAEIIIGKQRNGPIGTSRLTFQGQFSRFDNYAGPPRDDEY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 3e-97 | 52 |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 8e-97 | 49 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 5e-99 | 49 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 1e-98 | 49 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 4e-98 | 48 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-89 | 47 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-89 | 47 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 7e-84 | 46 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 5e-75 | 45 |
