Gene Information

Name : Patl_0251 (Patl_0251)
Accession : YP_659837.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 292531 - 293967 bp
Length : 1437 bp
Strand : -
Note : KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase-like; SMART: ATPase

DNA sequence :
TTGGCGCATACTAGCCACCTGTTCTTGAGGATAAATGTACCTTCTGTGAAAGCCGTTTCAGCAAAAAATAAAGATCAAAA
AGTCGAAAAACTTAAAGTTCCTCCGCATTCCATTGAAGCAGAGCAATCTGTGCTGGGCAGTATGTTGATCGCACCTGACT
CCTGGGATAAAGTCGCTGAACTTGTCACCGAGGAAGACTTTTACAACCGCTCCCATCAGGTCATTTATGGCGCGATTCTG
CGCTTATTGAAAAACAACCATCCAATCGATTTAATCACTGTTTCAGAAGATTTAGAGAATCTAGACGAGCTTGAAGAAGC
AGGCGGTTTCGCTTATTTAGGCGAGTTAGCGAAAAATACGCCAAGTGCTGCTAACGTCACGGCCTATGCCAATATTATAA
AAGAGCGCGCCGTCGTTAGAGAGCTAATTGGTGTGGCTCACGATATCGCCGATGTTGGTTATAATCCCGAAGGCCGAAAT
AGCGGCGAATTACTCGATATGGCGGAAAGTCGAGTTTTTGAAATTGCGGAAAAGCGAACCGCAAAAAACGAAGGTCCACG
AGGCATTGAGTCCGTACTAACAAAAACCATTGACCGCCTTGAAGAGTTAGTTAAAAACAATAAAGAAGTGACTGGTGTCT
CTACCGGATACACTGATTTAGATAAGAAAACCAGTGGGTTACAACCTTCAGATTTGATAATAGTTGCCGCGCGTCCTTCC
ATGGGTAAAACCACGTTCGCTATGAACTTGTGTGAAAACGCTATGTTATTGGAAGAAAAGCCAGTTTTGGTATTCAGCTT
AGAGATGCCCGCCGAACAGATCATGATGCGTATGCTTGCCTCACTGAGCCGCGTAGATCAAACCAAAATTCGTACCGCTC
AATTAGATGATGAAGATTGGGCCCGCATGTCTAACACTATGGCCATGCTCAAAGACAAAGATAACTTATACGTCGATGAC
TCATCCGGTCTGACACCAATGGAAGTGCGTACGCGTGCGCGTAAATTGGCGCGCGATCGCGGTGGTATTAGCCTGATTAT
GATCGATTACCTGCAATTGATGCAGGTGCCGGGCTTGAGTGATAACCGTACTTTAGAAATCGCCGAAATTTCTCGCTCGT
TAAAGTCTCTAGCAAAAGAGCTCGAAGTGCCGGTCGTTGCACTTTCGCAGCTAAACCGTGGACTAGAGCAGCGTTCAGAT
AAACGCCCCATTAACTCGGATTTGAGGGAATCAGGGTCTATTGAGCAAGATGCCGATTTGATCATGTTTATTTATCGAGA
CGAAGTGTATAACGAAGGCAGTGAGGACAAAGGCGTGGCTGAGATCATTATTGGTAAACAGCGTAACGGCCCTATCGGTA
CATCAAGACTTACCTTCCAAGGTCAGTTTTCTCGATTTGACAATTATGCTGGGCCGCCCAGGGACGACGAGTATTAA

Protein sequence :
MAHTSHLFLRINVPSVKAVSAKNKDQKVEKLKVPPHSIEAEQSVLGSMLIAPDSWDKVAELVTEEDFYNRSHQVIYGAIL
RLLKNNHPIDLITVSEDLENLDELEEAGGFAYLGELAKNTPSAANVTAYANIIKERAVVRELIGVAHDIADVGYNPEGRN
SGELLDMAESRVFEIAEKRTAKNEGPRGIESVLTKTIDRLEELVKNNKEVTGVSTGYTDLDKKTSGLQPSDLIIVAARPS
MGKTTFAMNLCENAMLLEEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTAQLDDEDWARMSNTMAMLKDKDNLYVDD
SSGLTPMEVRTRARKLARDRGGISLIMIDYLQLMQVPGLSDNRTLEIAEISRSLKSLAKELEVPVVALSQLNRGLEQRSD
KRPINSDLRESGSIEQDADLIMFIYRDEVYNEGSEDKGVAEIIIGKQRNGPIGTSRLTFQGQFSRFDNYAGPPRDDEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 3e-97 52
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 8e-97 49
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 1e-98 49
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 5e-99 49
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 4e-98 48
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 1e-89 47
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 1e-89 47
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 7e-84 46
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 5e-75 45