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Name : Patl_2456 (Patl_2456) Accession : YP_662026.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 2984605 - 2985903 bp Length : 1299 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAGATGCTAAGTATTTACGTAACGATATAAACATTGCGGCGCAAAAACTCGAAAAACGAGGTTACACCCTTGATGT TGCTCAGTTCACAGCACTAGAGGAAAAGCGCAAATCTTTACAGATGCGCACTCAAGAACTACAAAATGAACGCAATGTAC GCTCCAAGTCTATCGGTAAAGCGAAAGCATCAGGTCAAGATATTGAGCCTTTGCTTGCACAAGTCGGCCAACTTGGTGAT GAGCTTAATGCGGCCAAAGCCGAACTGACAGGCTTGCTAGATGAAATTCAGACGCTGACTTTGAATATTCCTAACTTGCC TGACGACAGTGTGCCTGAAGGCAAAGATGAAGACGAGAATGTAGAAGTGTCTCGTTGGGGCACGCCTCGGGAGTTTGATT TTGAAGTCAAAGATCACGTTGATTTAGGTGCTGGTGTCGCCAACGGTTTAGATTTTGAAACCGCCACTAAGTTAACCGGC TCTCGTTTTGTGGTGATGCGTGGCCAAATAGCGCGTTTAAACCGAGCCATTGCTCAGTTCATGCTTGATTTACACACAGA GCAGCATGGTTATCAAGAAATGTACGTGCCGTATTTAGTGAACGAAGAAAGCATGTTAGGTACAGGTCAATTTCCTAAGT TTGTAGGGGATGCTTTTCACACCAAACCCGCAACCGAAGAAGGTCAAGGCTTGTCCTTGATACCCACGTCAGAAGTGCCG TTAACCAATATTGCACGTGACTGTATTTTTGCAGCCAATGAATTACCGATTAAAATGACGGCGCATACTCCTTGCTTTAG AAGTGAAGCGGGGTCATATGGTCGTGATACTCGTGGTCTTATTCGTCAGCATCAATTCGATAAAGTGGAGATGGTGCAAT TGGTCGAAGCGGACAAATCATTCGAAGCTCTAGACGAATTAACTGGCAACGCTGAAAAAGTACTTCAGTTGCTTGAATTG CCCTACCGTAAGATGTTGTTGTGTACCGGCGATATGGGCTTTGGTGCATGCAAAACATTTGATTTAGAAGTGTGGTTACC CGCACAAGATACCTATCGTGAAATTTCGTCTTGCTCAAACATGCTTGATTTCCAAGCGCGTCGTATGCAAGCACGTTACC GCGACCCGCAAACGAATAAAACCGAGTTGCTACATACGCTAAATGGTTCAGGGTTGGCAGTAGGACGCACGCTAGTGGCC ATTTTGGAAAACTACCAGCAAGCCGATGGCAGCATTACCATTCCTGAAGTGCTTCAGCCTTATATGAATGGTGTAACTGT GATTGGTGCCGTTAAATAG Protein sequence : MLDAKYLRNDINIAAQKLEKRGYTLDVAQFTALEEKRKSLQMRTQELQNERNVRSKSIGKAKASGQDIEPLLAQVGQLGD ELNAAKAELTGLLDEIQTLTLNIPNLPDDSVPEGKDEDENVEVSRWGTPREFDFEVKDHVDLGAGVANGLDFETATKLTG SRFVVMRGQIARLNRAIAQFMLDLHTEQHGYQEMYVPYLVNEESMLGTGQFPKFVGDAFHTKPATEEGQGLSLIPTSEVP LTNIARDCIFAANELPIKMTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQLVEADKSFEALDELTGNAEKVLQLLEL PYRKMLLCTGDMGFGACKTFDLEVWLPAQDTYREISSCSNMLDFQARRMQARYRDPQTNKTELLHTLNGSGLAVGRTLVA ILENYQQADGSITIPEVLQPYMNGVTVIGAVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 4e-106 | 54 |
