Gene Information

Name : Patl_2450 (Patl_2450)
Accession : YP_662020.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Virulence
Product : two component LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 2979604 - 2980248 bp
Length : 645 bp
Strand : -
Note : PFAM: regulatory protein, LuxR response regulator receiver; KEGG: vfi:VF1627 response regulator

DNA sequence : 
TTGATAAAAATATTGTTGGTTGATGACCATGAGTTGGTCAGAACCGGTATAAGACGTATTTTGGAAGATGTACAAGGTTT
TGTCGTAGTTGGAGAAGCTACAACGGGTGAAGAGGCAGTCAAATTCTGCCGTAAAAATGCACCCGATTTGGTATTAATGG
ATATGAGTATGCCTGGCATTGGTGGATTGGAAGCGACCAAGCAAATCTTGCGTTTTAGTGAAAATACACGTGTTATCGTG
TTATCGGTTCACAAAGAAAACCCCATTCCTGCGAAAGTGATGCGTATGGGAGCATTTGGTTATTTAACGAAAGACTCAGA
TCCTAAAGAGATGGAGTTGGCTATTCGTAAAGTAGCCGCTGGGCAAAAGTACGTTTCCCCTGATATCGCCCAGCAAATTG
CAATAGGTGCGCTAGATTTCAGTGACGGCAACCCGTTTGAGTCTCTGTCAGAGCGCGAATTAGAGATCACGCTTATGCTG
ACCAAGGGTTCAAAAGTCCCAGACATTGCCAAGTTTTTAAATATCAGTGCGAAAACAGTGAACACCCATCGTTATCGTAT
GTTTGAAAAGCTCAATGTCAGTACGGATGTTGAGCTGACTCATTTGGCACTGCGCCATAAGTTGATTAATTCAGAAAATT
TGTAA

Protein sequence : 
MIKILLVDDHELVRTGIRRILEDVQGFVVVGEATTGEEAVKFCRKNAPDLVLMDMSMPGIGGLEATKQILRFSENTRVIV
LSVHKENPIPAKVMRMGAFGYLTKDSDPKEMELAIRKVAAGQKYVSPDIAQQIAIGALDFSDGNPFESLSERELEITLML
TKGSKVPDIAKFLNISAKTVNTHRYRMFEKLNVSTDVELTHLALRHKLINSENL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 1e-44 49
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 1e-44 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_2450 YP_662020.1 two component LuxR family transcriptional regulator VFG1889 Protein 4e-53 51