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Name : Patl_0233 (Patl_0233) Accession : YP_659819.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 276966 - 278186 bp Length : 1221 bp Strand : + Note : TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: ppr:PBPRA3479 putative general secretion pathway protein F DNA sequence : ATGGCAGCGTTTGCATATAAAGCGATTGATAAAAGCGGTAAAAATAAAAGTGGCGTACTAGAAGGTGACAATGCTCGCCA AATACGTCAGCAACTGCGTGAAAAGCAACTTATTCCGCTAGAAGTCGAACAAGTCGCGGAAAAGGAGCGCCAGTCCGCCA AACAGTTTTCATTGTTCAAACCGAAAATTTCTGCCTCTGATTTAGCCTTGTTAACGCGTCAGTTAGCGACTTTGGTAGAG TCCTCTTTGCCCATTGAAGAAGCGTTAATGGCTGTGGCGCAGCAATCTGAAAAACCTCGCCAGAAAAACATGATGATGGC GGTACGCAGTAAAGTGGTAGAGGGATACAACTTAGCGGATGCCATGGCGGAATTCCCTCACGTATTTGATGAGCTGTTCA GAGCTATGGTCGCAGCGGGTGAAAAGTCTGGCCACTTAGATACGGTGCTTAATCGCTTAGCGGATTACACTGAGAAGCGT CAACAAACCCGCAGCCAAATAACCCAAGCCATGGTTTACCCTACGCTTATGATGTTTTTTGCCATGGGAATAGTGATCTT ATTACTCACCGTGGTGGTGCCGAAAATTGTCGGCCAATTTGATCACATGGGGCAAGATTTGCCCACCATTACTAAGGTGC TGATCAGCGTCAGTGAATGGATGCAAAACTACGGTTTACTATTGATTGTGATTTTTGCATTGGCGGCTGTTGTTCTAAGT CGCGTGCTGCAACAACCTGCGATGAAAAAACGCTACCATCATTTTATTCTAGGTTTACCCTTATTGGGAAAGGTCTCTAA AGGGTTAAATACTGCACGCTTTGCTCGAACATTAAGTATTCTGACCTCTAGCTCGGTGCCTTTACTTGAGAGCATGAAAA TTTCCAGTGATGTGTTGGCGAACTTGTACATTCGAGACGAGGTCAAAGGTGCATCAGTCAATGTAAAAGAAGGTTCAAGC CTGCGTGCGGCTCTAGAGCGTACCAAAATGTTTCCACCCATGATGATGCATATGATTGCATCGGGGGAGCGTAGTGGTGA GCTGACGCAAATGTTAGGGCGCGCAGCGGACAACCAAGACAGAGAGTTTGAATCCTTGGTTGGGGTATCTTTGAAAGTGT TCGAGCCTCTTTTAATTGTCTCTATGGCGGGTATTGTGCTGTTTATCGTAATGGCCATCCTGCAACCTATTTTAGCTTTA AACAACATGGTGAATCTTTAA Protein sequence : MAAFAYKAIDKSGKNKSGVLEGDNARQIRQQLREKQLIPLEVEQVAEKERQSAKQFSLFKPKISASDLALLTRQLATLVE SSLPIEEALMAVAQQSEKPRQKNMMMAVRSKVVEGYNLADAMAEFPHVFDELFRAMVAAGEKSGHLDTVLNRLADYTEKR QQTRSQITQAMVYPTLMMFFAMGIVILLLTVVVPKIVGQFDHMGQDLPTITKVLISVSEWMQNYGLLLIVIFALAAVVLS RVLQQPAMKKRYHHFILGLPLLGKVSKGLNTARFARTLSILTSSSVPLLESMKISSDVLANLYIRDEVKGASVNVKEGSS LRAALERTKMFPPMMMHMIASGERSGELTQMLGRAADNQDREFESLVGVSLKVFEPLLIVSMAGIVLFIVMAILQPILAL NNMVNL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 4e-95 | 52 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-94 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Patl_0233 | YP_659819.1 | general secretion pathway protein F | VFG2049 | Protein | 5e-92 | 51 |
| Patl_0233 | YP_659819.1 | general secretion pathway protein F | VFG0181 | Protein | 8e-95 | 51 |
| Patl_0233 | YP_659819.1 | general secretion pathway protein F | VFG1870 | Protein | 8e-85 | 44 |
