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Name : Patl_0231 (Patl_0231) Accession : YP_659817.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 273315 - 275384 bp Length : 2070 bp Strand : + Note : TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein NolW-like; KEGG: cps:CPS_4591 general secretion pathway protein D DNA sequence : ATGAATTTTATCCAGCGAACAAGCCGTAATATTTTACCCAGCTTGTGCCTTATTATTGGGGCCGCATTTTTCTCTGCGTC AACTTTTGTAGCAGCCAACGAATACTCACCTAACTTTAAAAATACTGATATCGGTGAATTCATTAATATTGTGGGTAAAA ACCTCAAAAAGACCATCATTGTTGACCCCAATGTGCGCGGCAAGATATCTGTTCGCAGTTACGATCTGTTAAACGAGGAA CAGTATTACCAATTCTTTTTAAACGTATTGCAAGTGTATGGCTATGCCGTGGTTGAAATGCCGACGGGTATAGTCAAAGT GGTACGTTCAAAAGACGCAAAAACATCAAACTTGCCCGTTGTTGAGGGCACACCGTTTGACGGGGATGAAATGATTACCC GGGTAATGCCAGTGTATAACGTACCGGTACGTGAACTTGCTCCTATTTTGCGTCAACTAAATGACCAAGCAGGCGGCGGC AATGTCGTTAGCCATGATGCATCAAACGTAATGATGCTAACGGGGCGAGCTGCAGTGGTAAATAGGTTGGTGGAAATCAT TGAGCGGGTAGATAAAGCCGGCGATGAAGAAGTGGAAATCGTGAAGCTAAAATTCGCCTCGGCCACAGAGTTAGTACGCA TCATCGAGAGCATTAATAAAACCACGGGTAAAGCCAGCGCAAGTGGCAAAGATGCTCCTCGCGTAGTGGCTGATGACAGA ACAAACAGTATTATGGTCAGTGGTGATATCAAAGCGCGCCAGCGTATCGTGAATCTGATTGAACGCATGGACCAGGAATT AGAAACCAGCGGTAACACGCGAGTTATCTTCCTTAAATATTCCAAAGCAGAAGAACTAGTCAAAGTATTGCAAGGGGTTA GTGCCAGCATTCAAGCCGAAGAGCAAGGTGCTGCGAAATCAACCAGTAAAGCGGCGCGTGATATCAGTATTGAAGCCCAC GAAGATTCCAATGCCCTCGTTATCACCGCCCAGCCAGATATGATGCGTTCATTAGAAGACGTTATCCGCCAACTAGATAT CCGCCGCGCACAAGTACAAGTGGAAGCGATAATCGTGGAAGTGTTTGAAGGCGACGGCACCACGGTTGGTGTGCAATGGG CAAGTGAAAAATACGGTGCGCAGCAGTTTAGCAATGGTAACGTGGTAGGTATTGGCTCATTAGCCGTTGCCGCAGAACAA GCAGAAGATACAACGACAACCACAGTTGGTTTTGATGATGATGGCGACCCGTACTCATTTGATGAAACAACAGAAGGAGA CTACACCGCCCTTGCTTCACTGCTTGGTGGCGTAAATGGTTTCTTGGTGGGGGCAGTAAAAGATGGTTGGGGCGCAGTGC TGCAAGCGGTGAGCACAGATACTAACTCGAACGTACTGTCTACCCCGCATTTAACGACCCTTGATAATGAAGAGGCCTTT TTTATTGTGGGTCAAGAAGTACCGATTATCACAGGCTCCACAACCGGTTCGAATAACACCAACCCATTTCAGTCTGTAGA GCGTCAAGAAATAGGTATTAAGCTTAAAGTTACCCCACAAATCAACGAAGGTAACGCAGTACAACTGCTTATAGAGCAAG AGGTATCAAGTATTAGCGGCGCAACCTCAGTGGATATTCTGATCAACAAACGTGAGATCAAAACCACCGTTATAGTGGAC GATGGAGGCACGATTGTACTGGGTGGATTAATTGATGATGATGTGCAAGAGAGCGTGTCTAAGGTGCCTATTTTGGGTGA TATCCCTTATCTTGGAAACTTGTTTAAGTCGACTACTACCAGTAAATCTAAACGTAATTTGATGGTGTTTATTCGTCCTA CGATTATTCGCGATGGGGTAACAGCCAGCGATATTAGTCGTAAAAAGTACAATTACATTCGCGCTGAACAGCTTAAGCGC CAGTCAGAGGGCATCCCGTTAATGCCATTTTCTGAAAACCCAGCGTTACCAGAATGGGACGATGGCTTAGCTTTGCCGCC TTCCTATGGCGAGTATATGGAAAAAAGAGCGCAATCTGAAAAAGCCGCGCAGCAAAAGGATGATGAGTAG Protein sequence : MNFIQRTSRNILPSLCLIIGAAFFSASTFVAANEYSPNFKNTDIGEFINIVGKNLKKTIIVDPNVRGKISVRSYDLLNEE QYYQFFLNVLQVYGYAVVEMPTGIVKVVRSKDAKTSNLPVVEGTPFDGDEMITRVMPVYNVPVRELAPILRQLNDQAGGG NVVSHDASNVMMLTGRAAVVNRLVEIIERVDKAGDEEVEIVKLKFASATELVRIIESINKTTGKASASGKDAPRVVADDR TNSIMVSGDIKARQRIVNLIERMDQELETSGNTRVIFLKYSKAEELVKVLQGVSASIQAEEQGAAKSTSKAARDISIEAH EDSNALVITAQPDMMRSLEDVIRQLDIRRAQVQVEAIIVEVFEGDGTTVGVQWASEKYGAQQFSNGNVVGIGSLAVAAEQ AEDTTTTTVGFDDDGDPYSFDETTEGDYTALASLLGGVNGFLVGAVKDGWGAVLQAVSTDTNSNVLSTPHLTTLDNEEAF FIVGQEVPIITGSTTGSNNTNPFQSVERQEIGIKLKVTPQINEGNAVQLLIEQEVSSISGATSVDILINKREIKTTVIVD DGGTIVLGGLIDDDVQESVSKVPILGDIPYLGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTASDISRKKYNYIRAEQLKR QSEGIPLMPFSENPALPEWDDGLALPPSYGEYMEKRAQSEKAAQQKDDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-152 | 54 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 2e-159 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Patl_0231 | YP_659817.1 | general secretion pathway protein D | VFG2047 | Protein | 1e-150 | 54 |
