Gene Information

Name : Patl_2239 (Patl_2239)
Accession : YP_661811.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2715099 - 2715800 bp
Length : 702 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein

DNA sequence : 
ATGAATAATATTGGTAAGGTCTTTACTACTGATGTAGTGCAAACCCATGCACTCAAAGATTTTACTTTACAGGTCAACGA
AGGGGATTTTTTGGCTGTAACCGGTACTTCAGGCTCAGGTAAAACCACATTCTTAAACGTGGCAGGTTTGCTCGAAACGT
TCGATAGTGGCGAATACACTCTTGATGGGCAAGATATTCAGGGCTTGACCGACCGTCAGCGCAGTCAATTACGCAATGAA
AAGATAGGCTTTATTTTTCAAAGCTTTAATCTAATTCCCGATTTGAATTTATTTGATAATGTAGACGTGCCTCTGCGCTA
CCGTGGCTTTAATACTGCCCAGCGTAAGGAGCGAATATTGAATAGCTTAGAGCGAGTTGGCTTAGGCAAGCGTTTAAAAC
ATTTCCCTGCTCAGTTATCAGGTGGTCAGCAACAGCGAGTCGCTATCGCACGGGCGCTAGCAGGCTCACCACGATTTTTA
CTGGCCGATGAGCCAACAGGTAATCTAGACAGTGAGATGGCAAAAAGTGTGATGGCGTTGCTACAAGAAATCAACCAAAG
TGGCACGACTATTATCATGGTCACTCACGACCAAAGTTTAGCCCAGCAGGCTCAGCGACAAATAGTGGTGCGCGACGGCC
GTGTGTGTGACTCAAGTACATCAAGCACTTCGCCCCAAGCAGATAGCGTACAACGTGTTTAG

Protein sequence : 
MNNIGKVFTTDVVQTHALKDFTLQVNEGDFLAVTGTSGSGKTTFLNVAGLLETFDSGEYTLDGQDIQGLTDRQRSQLRNE
KIGFIFQSFNLIPDLNLFDNVDVPLRYRGFNTAQRKERILNSLERVGLGKRLKHFPAQLSGGQQQRVAIARALAGSPRFL
LADEPTGNLDSEMAKSVMALLQEINQSGTTIIMVTHDQSLAQQAQRQIVVRDGRVCDSSTSSTSPQADSVQRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-35 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-35 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_2239 YP_661811.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-49 47
Patl_2239 YP_661811.1 ABC transporter-like protein NC_008702.1.4606598. Protein 2e-43 47
Patl_2239 YP_661811.1 ABC transporter-like protein CP001581.1.gene798.p Protein 7e-35 45