Gene Information

Name : Patl_0218 (Patl_0218)
Accession : YP_659804.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 261346 - 262065 bp
Length : 720 bp
Strand : -
Note : PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_0651 DNA-binding response regulator

DNA sequence : 
ATGACAGATAGCATCCTCATTGTTGAAGACGACCTTGATATAGCCAACCTAATGCGGGTTAATTTACTCGAACTTGGTGT
TGAAATAGATCATCAAGTCGACGGCGAAACTGCGCTACACCAAGCACTAAGTAACGAGTATGACGTTATTTTACTAGACG
TCATGCTACCCAACATGAGCGGCTTAGATATTTGTCGTAAAATTCGTGATGAACGCCCGATGCAAATCATCATCATGCTG
ACCTCAAAAAACTCTGAAACCGATAGGGTATTGGGATTAGAGTTAGGCGCAGATGATTACATGACAAAGCCGTTCAGCGT
GCGTGAGCTACAAGCCAGGGTGCGTTCACAGTTACGCAAAGTGCACGCTTTGCGCCAGTCTCACGTACCGTCACAGCAAC
CTGATGAAGCGTTAAATACAGGTGATTTACGAATAGACCAAAAAACCCATCAGGTGTTTTTAGCAGAGCAAGAACTGGTA
CTAACCGCCACCGAGTTTGAACTACTGCATCATCTCGCCAGCCACCCTGGCCAAGTGTTCAGCCGAAGCCAATTATTAGA
ATCGGTATGGGGTTATCACCACAGCGGCTATGAGCATACCGTCAACTCTCATATCAATCGACTGCGGGCCAAGCTGGAAA
ACGATGCCACCTCTCCTAAAATTGTGCAAACCGTCTGGGGCGTGGGCTACAAATTTAATCCTCAAGGGGTATCAGGCTAA

Protein sequence : 
MTDSILIVEDDLDIANLMRVNLLELGVEIDHQVDGETALHQALSNEYDVILLDVMLPNMSGLDICRKIRDERPMQIIIML
TSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVHALRQSHVPSQQPDEALNTGDLRIDQKTHQVFLAEQELV
LTATEFELLHHLASHPGQVFSRSQLLESVWGYHHSGYEHTVNSHINRLRAKLENDATSPKIVQTVWGVGYKFNPQGVSG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-51 48
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-51 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_0218 YP_659804.1 two component transcriptional regulator NC_012469.1.7685629. Protein 5e-43 44
Patl_0218 YP_659804.1 two component transcriptional regulator HE999704.1.gene2815. Protein 2e-46 43
Patl_0218 YP_659804.1 two component transcriptional regulator AF155139.2.orf0.gene Protein 2e-41 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_002952.2859905.p0 Protein 1e-47 42
Patl_0218 YP_659804.1 two component transcriptional regulator AE000516.2.gene3505. Protein 3e-39 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_002758.1121668.p0 Protein 8e-48 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_009641.5332272.p0 Protein 8e-48 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_013450.8614421.p0 Protein 8e-48 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_007793.3914279.p0 Protein 8e-48 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_002745.1124361.p0 Protein 8e-48 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_009782.5559369.p0 Protein 8e-48 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_002951.3237708.p0 Protein 8e-48 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_007622.3794472.p0 Protein 1e-47 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_003923.1003749.p0 Protein 6e-48 42
Patl_0218 YP_659804.1 two component transcriptional regulator NC_014475.1.orf0.gen Protein 2e-40 41
Patl_0218 YP_659804.1 two component transcriptional regulator NC_005054.2598277.p0 Protein 2e-40 41
Patl_0218 YP_659804.1 two component transcriptional regulator FJ349556.1.orf0.gene Protein 1e-41 41
Patl_0218 YP_659804.1 two component transcriptional regulator DQ212986.1.gene4.p01 Protein 2e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_0218 YP_659804.1 two component transcriptional regulator VFG1702 Protein 1e-51 48
Patl_0218 YP_659804.1 two component transcriptional regulator VFG1563 Protein 2e-51 47