Gene Information

Name : Patl_2024 (Patl_2024)
Accession : YP_661596.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Resistance
Product : MerR family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG0789
EC number : -
Position : 2467200 - 2467589 bp
Length : 390 bp
Strand : -
Note : PFAM: regulatory protein, MerR; KEGG: sde:Sde_1961 putative transcriptional regulator, MerR family

DNA sequence : 
ATGAAAATAGGTGAACTATCAAAAAAGAGTGGGTGTACTATCCAGACGATCCGCTTTTATGAAAAACAGGATTTGTTGGA
AGCTTGCAATCGCAGTGACGGCAACTACAGAATTTACGACGCCTCATCGTTAAGGACATTGCAATTCATTAAACAGTGCC
GTTCCTTAGGATTGACTATAATTGAAATTAAGCAGTTATTGGATACAAAAAATAATCCCGATAAAAGTTGTTCTAGTGTG
AACAATTTGATCCACCAACATATGATTGACGTCACTCATCGCATTGCAGAGCTTGAGGAGCTAAAACTTACACTATCTGA
GATGGCTTCGGCATGCACCGATAATAGAAAAGTTAAAGAATGTGGGGTATTGCAGTTACTTGAAGAGTGA

Protein sequence : 
MKIGELSKKSGCTIQTIRFYEKQDLLEACNRSDGNYRIYDASSLRTLQFIKQCRSLGLTIIEIKQLLDTKNNPDKSCSSV
NNLIHQHMIDVTHRIAELEELKLTLSEMASACTDNRKVKECGVLQLLEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C98 AAN62191.1 putative transcriptional regulator Not tested PAGI-2(C) Protein 2e-28 42
cadR ACS32041.1 MerR family transcriptional regulator Not tested AbaR5 Protein 8e-26 41
cadR ADZ05769.1 MerR family transcriptional regulator Not tested AbaR11 Protein 6e-26 41
pbrR CAJ77021.1 transcription regulator Not tested AbaR1 Protein 5e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_2024 YP_661596.1 MerR family transcriptional regulator BAC0058 Protein 1e-27 46