Gene Information

Name : Patl_1945 (Patl_1945)
Accession : YP_661517.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Unknown
Product : transposase, IS4
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2362261 - 2363523 bp
Length : 1263 bp
Strand : -
Note : PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase

DNA sequence :
ATGTCTTTTATCAAGAAAGAGGATTTCGCCAAAAACCAACTAGATAACAACACCATGCGTGATATTCATATCTTACACGA
TTTGCTTAAAAAACAATGCCCTAATCTACATGCCAAACGTCTTTCCGCTTTGATGGTTGCCACCCAATCTTTGCTAGATG
GCCAGCAACTATCGTTGACCGAATTAGGACGCAATATCTCAGGCTCCGTGGCCCCGAAACACAACATTAAACGCATCGAC
AGGCTGCTTGGTAATAACAACCTACATAATGAACGGCTCGACATCTACCGTTGGCACGCTCGCTTGCTTTGCGGTGCTAA
CCCCATGCCCGTTGTCCTTGTGGATTGGTCTGATGTGCGTGAGCAGCTCAGGCATTTAACCTTGCGTGCATCGGTCAGTG
TTCAGGGGCGCTCTGTCACACTTTATGAGCGCGTATTTTCCTTTGGAGAATACAACTCTCCTGTCAGTCATAACCCCTTT
TTACGGGAGTTAGCGAGTATCCTGCCGTTGGGTTGTTGCCCGTTGATTGTGACCGATGCAGGCTATCGTAACCCTTGGTT
TCGTGAAGTCGAAAAGCATGGATGGTTCTGGCTAGGCCGAGTGCGCGGTGATGTGGGATTTAAGCGGGATGGGCAAGCAT
CATGGCAAAGTAATAAGTCGTTTTATCCCAGTGCAAATTCTCGCGCCAAATACCTTGGGTGTGGGCAATTAGGGCGTAAA
AGCCCGCTTCATGCACACCTGCATTTGTACAAAGCAAAGGCCAAACATCGAAAGGACAACCGCTCTTCAAAGGCAGGTCG
AAACCACACCGCCCAGCAAAGCTATCGTGCCGGTAGCAAAGAGCCTTGGCTACTCGCCACTAACCTTCCCGAGAACGATA
AACTTAACTCAAAACAACTGGTTTCTCTTTACGCAAGACGGATGCAAATAGAAGAAACCTTCCGCGATATTAAAAGCCCT
CAATACGGAATGGGACTGCGCCACAGCAACAGTCGCTGTACCAAACGATTCGACATATTACTGCTGATAGCGATGCTCGC
AGAATGGCTATTACGGCTACTCGGTATCATCGCCGTGAAGCAAAACTGGGAAAGAGCATTTCAAGCTAACACCATCCGTC
ATCGGCGCGTGTTATCTATCATTAGGCTAGGTAGAGAAGTCAGGAAAAGGGCAAAAGATTACAGGATGAACTCAGCCCAA
ATGACATGGGCTATCGCCCAATATATTACCTGGGTTCACAAAGAAGGAAGACCAATTCTATGA

Protein sequence :
MSFIKKEDFAKNQLDNNTMRDIHILHDLLKKQCPNLHAKRLSALMVATQSLLDGQQLSLTELGRNISGSVAPKHNIKRID
RLLGNNNLHNERLDIYRWHARLLCGANPMPVVLVDWSDVREQLRHLTLRASVSVQGRSVTLYERVFSFGEYNSPVSHNPF
LRELASILPLGCCPLIVTDAGYRNPWFREVEKHGWFWLGRVRGDVGFKRDGQASWQSNKSFYPSANSRAKYLGCGQLGRK
SPLHAHLHLYKAKAKHRKDNRSSKAGRNHTAQQSYRAGSKEPWLLATNLPENDKLNSKQLVSLYARRMQIEETFRDIKSP
QYGMGLRHSNSRCTKRFDILLLIAMLAEWLLRLLGIIAVKQNWERAFQANTIRHRRVLSIIRLGREVRKRAKDYRMNSAQ
MTWAIAQYITWVHKEGRPIL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
IS1999 CAJ77042.1 Insertion sequence Not tested AbaR1 Protein 3e-101 53
tnp AEA34664.1 IS10 transposase Not tested Not named Protein 6e-95 51
IS10 CAI43894.1 transposase for IS10 Not tested LEE Protein 2e-95 51
SF2983 NP_708757.1 iso-IS10R ORF Not tested SHI-1 Protein 4e-95 51
tnp AEA34674.1 IS10 transposase Not tested Not named Protein 1e-94 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_1945 YP_661517.1 transposase, IS4 VFG0647 Protein 2e-95 51