Gene Information

Name : Patl_1874 (Patl_1874)
Accession : YP_661448.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 2269022 - 2270542 bp
Length : 1521 bp
Strand : -
Note : PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1885 aldehyde dehydrogenase family protein

DNA sequence : 
ATGATCTATGCAAACCCAGGCAGCGCTGATGCTGTAATCAATTTTAAAGCTAAGTATGAAAACTTTATCGGCGGTGAATG
GGTAGCGCCAGTTAAAGGTGTTTACTTTAATAATCTAACCCCTGTTACTGGCGAAGAATTTTGTGAGATCCCTCGCTCTA
GTGCAGAAGATATTGAATTGGCGATTGATGCAGCTCATGCCGCAAAAGACGCATGGGGTAAAACCTCTGTGCAAGAGCGC
TCAAATATCCTATTAAAAATAGCGGACCGCTTGGAAGAAAACCTGACCAGACTCGCTGTTGCAGAAACGTGGGACAATGG
TAAACCCATCAGAGAGACCATGGGCGCAGATATTCCATTAGCCGTCGACCATTTCCGGTATTACGCTGGCTGCATAAGAG
CCCAAGAAGGTACACTCTCGCAAATTGATGACAACACAGTTGCCTATCACTTTCATGAGCCAATGGGCGTTGTAGGGCAA
ATTATCCCATGGAACTTCCCTATTTTAATGGCAGCATGGAAATTAGCGCCAGCACTCGCAGCAGGTAATTGCATCGTGCT
TAAACCTGCTGAGCAAACACCTGCAAGTATCCTTGTGTTGGCCGAATTGATTGCTGATATCCTACCTGCGGGCGTGCTTA
ATATCGTTAACGGTTTCGGCAAAGAAGCCGGTGAAGCTTTAGCAACAAGTACACGCATTGCAAAAATTGCTTTTACTGGT
TCAACTGCGGTAGGCGGCCACATTTTAAAATGTGCAGCTGAAAATCTCATTCCCTCTACGGTAGAACTTGGTGGTAAATC
CCCGAATATTTTCTTCAAAGACATTACCAACTTTGAAGATGATTACCTCGATAAATGCGCTGAAGGTTTTGCTTTGGGTT
TCTTCAACCAAGGGGAAGTCTGTACATGCCCTTCACGTGCCTTAGTGCAAGAAGATATCTTCGATGAGTTTATGGAGCGT
GTTCTAGAAAAAACGAAAAAAATCATTCGTGGCAATCCTCTTGATGACAGCACTATGGTAGGTGCTCAGGTATCGAAAAT
TCAGTTCGATAAAATTATGGGTTACATTGATATTGGCCGTGAAGAAGGCGCTTCCGTGTTAACTGGAGGGTTCTCTGAAG
AATCTGCACCGGCAATTGATGATGGGTACTACATTCAGCCTACTATCCTCAAAGGCGACAACTCAATGCGTGTTTTCCAA
GAAGAAATTTTTGGGCCTGTTATTTCAGTCACTACGTTCAAAACGCCAGAAGAAGCGGTCGCTATCGCTAATGACACCGC
TTACGGTTTAGGTGCAGGCGTTTGGACCCGAGACGCTAATTTAGCGCACAAGATGGGGCGGGCAATAGAATCAGGTCGCG
TATGGACCAATTGTTATCACCTGTACCCTGCTCACGCAGCTTTTGGTGGATACAAAAAATCTGGCATAGGCCGCGAAACG
CACAAAATGATGTTAGATCATTATCAACAAACCAAGAACTTGTTGGTGAGTTATGACACTGCTCCACTAGGTTTCTTCTA
A

Protein sequence : 
MIYANPGSADAVINFKAKYENFIGGEWVAPVKGVYFNNLTPVTGEEFCEIPRSSAEDIELAIDAAHAAKDAWGKTSVQER
SNILLKIADRLEENLTRLAVAETWDNGKPIRETMGADIPLAVDHFRYYAGCIRAQEGTLSQIDDNTVAYHFHEPMGVVGQ
IIPWNFPILMAAWKLAPALAAGNCIVLKPAEQTPASILVLAELIADILPAGVLNIVNGFGKEAGEALATSTRIAKIAFTG
STAVGGHILKCAAENLIPSTVELGGKSPNIFFKDITNFEDDYLDKCAEGFALGFFNQGEVCTCPSRALVQEDIFDEFMER
VLEKTKKIIRGNPLDDSTMVGAQVSKIQFDKIMGYIDIGREEGASVLTGGFSEESAPAIDDGYYIQPTILKGDNSMRVFQ
EEIFGPVISVTTFKTPEEAVAIANDTAYGLGAGVWTRDANLAHKMGRAIESGRVWTNCYHLYPAHAAFGGYKKSGIGRET
HKMMLDHYQQTKNLLVSYDTAPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 6e-148 65
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 1e-157 65
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 1e-157 65
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 1e-157 65
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-156 65
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 1e-55 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_1874 YP_661448.1 aldehyde dehydrogenase VFG0082 Protein 3e-148 65