Gene Information

Name : Patl_1603 (Patl_1603)
Accession : YP_661179.1
Strain : Pseudoalteromonas atlantica T6c
Genome accession: NC_008228
Putative virulence/resistance : Virulence
Product : two component sigma-54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1908294 - 1909643 bp
Length : 1350 bp
Strand : +
Note : PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: stm:STM2562 putative transcriptional regulator of two-component regulator prot

DNA sequence : 
GTGAGTAAAGTTGAAGCGTCGTTAAAGCCACAAATATTACTCGTAGATGATGACGAAAGTTTACTACGGTTAATGGCTAT
TCGCTTAGAAGGTGAAGGCTATAGTGTGCAAAGTGCAGAAGGCGGCAAAGAAGCGCTGCGCTTGATGAATACCCAAAATT
TTGATGCGGTATTAAGCGACCTTAGAATGCCAGGATTAGATGGCTTAAGTTTATTTGAAGAAATTATGTCCTTGGGCAAA
GACCTGCCGGTTATTTTGATGACAGCCCACGGCACAATCCAAGATGCGGTTGAGGCGACCCAAAGAGGCGTTTTTGGTTT
CCTTACCAAGCCGATTGATCATACTGAGTTGCGTGACCTGCTAGCCAAAGCGGTGAGTCAAAGCCAAGGCTCGCAAACAA
GTGCTTGGCGTGAGCAAATTATCACGCGTTCCATGCAAATGGAGCAGTTGTTGGATCAAGCCCACCGAGTGGCGCAACGT
GACGTCAGTGTGTTGGTCAGCGGGGCAAGTGGAACGGGTAAAGAGTTATTGGCCAATGCCATTCACAAAGCCAGTAAAAG
GGCGAATAAACCGTTTGTGGCGATCAACTGTGGTGCTTTGCCTGAAAACCTACTTGAGTCTGAACTTTTCGGGCACGCCA
AAGGGGCCTTTACTGGTGCTGTGAATGAACATCAAGGCTTGTTTCGTGAAGCAGATGGTGGGACGTTGTTTTTAGATGAA
ATTGGTGACATGCCAACGCCGTTGCAAGTTAAATTACTTCGCGCATTGCAAGAGCAAGTTATTCGTCCTGTGGGTAGCAG
CAAACAAATACCTGTTGATGTTCGCATTATTTCGGCGACTCACAAAAATCTTGCAACAGAAATGAGTGAAGGGAATTTCC
GTGAGGATCTGTATTATCGTTTAAACGTTGTGAATTTAACGCTGCCAACGCTGCGTGAACGCTCAGAAGATATTCCCTTG
CTGGCTCGTTACCTACTTAAGAAAAGCGCCGAGCGCCATGAAGTGCGCGTCAGCCGTTTTTCTGATGACGCCATGCAACT
GTTGACCACTGAATTGTGGCCAGGCAATGTGCGCCAGTTAGTCAATGTGGTTGAGCAGTGCGTTGCATTAACACAAACAT
CAGTGATTGCAGTGCACCTTGTGGAACAAGCGCTGTCGACGTCTGAGCAAAAATGGCCAACGCTCACCGAAGCGCGAGAT
GCTTTTGAACAGAGTTATCTGCTAAAACTGCTCAAAATGACCGACGGGAATGTTACTCGGGCCGCTGAAATTGCCGGTCG
TAATCGCACCGATTTACACAAGTTGATGAAGAAACATGATTTGCACTCTACTGATTTTAAGCATGACTAA

Protein sequence : 
MSKVEASLKPQILLVDDDESLLRLMAIRLEGEGYSVQSAEGGKEALRLMNTQNFDAVLSDLRMPGLDGLSLFEEIMSLGK
DLPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHTELRDLLAKAVSQSQGSQTSAWREQIITRSMQMEQLLDQAHRVAQR
DVSVLVSGASGTGKELLANAIHKASKRANKPFVAINCGALPENLLESELFGHAKGAFTGAVNEHQGLFREADGGTLFLDE
IGDMPTPLQVKLLRALQEQVIRPVGSSKQIPVDVRIISATHKNLATEMSEGNFREDLYYRLNVVNLTLPTLRERSEDIPL
LARYLLKKSAERHEVRVSRFSDDAMQLLTTELWPGNVRQLVNVVEQCVALTQTSVIAVHLVEQALSTSEQKWPTLTEARD
AFEQSYLLKLLKMTDGNVTRAAEIAGRNRTDLHKLMKKHDLHSTDFKHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-69 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-69 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_1603 YP_661179.1 two component sigma-54 specific Fis family transcriptional regulator BAC0467 Protein 5e-81 49
Patl_1603 YP_661179.1 two component sigma-54 specific Fis family transcriptional regulator BAC0089 Protein 2e-92 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Patl_1603 YP_661179.1 two component sigma-54 specific Fis family transcriptional regulator VFG1214 Protein 4e-76 44
Patl_1603 YP_661179.1 two component sigma-54 specific Fis family transcriptional regulator VFG1249 Protein 3e-69 44
Patl_1603 YP_661179.1 two component sigma-54 specific Fis family transcriptional regulator VFG0116 Protein 3e-61 42