|
Name : lysS (Patl_1361) Accession : YP_660941.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1636610 - 1638163 bp Length : 1554 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGAACAGCAACAAGATGAAAACAAGCTCATAGCTGAGCGCCGGGCTAAACTTTCACAGATCCGTGAAAATTGTAA ATCGAACGGCTTCCCTAATACCTTCCGCCGTGAATTTTACAGCGAAGATCTTCAAGCTGAATTTGGTGAGCACGAGAAGG CAGCCCTAGAAGAACTCGGTAAAGTGGTCAGCATTGCTGGGCGTATTCTTGCTAAACGTGGTCCATTTCTGTTGTTACAA GACATGACGGGTCGTATTCAAGCGTACGCCTCAAAAGACACGCAAAAAGACATTAAAGCACGTTACACCAGTTTAGATAT TGGTGACATCATTGGTGTTAAAGGTGAGCTACACAAGTCGGGTAAAGGCGACTTGTACGTCAACATGAACGAATATCAAT TGTTGACGAAGTCACTGCGTCCGTTGCCTGAAAAGTTCCATGGCCTTGCTGACCAAGAAACAAAGTATCGCCAGCGTTAT GTTGATTTGATCACTAATCAACAAACCCGCGAGACCTTTATGATCCGTAGCAAAATTGTCACCGGTATTCGCAATTTCCT AAGTGAGCGTAAGTTCATGGAAGTCGAAACGCCTATGCTACAAGTGATCCCAGGTGGCGCCACGGCAAAACCGTTCAACA CGCATCACAATGCTTTAGACATTGACATGTACTTGCGTATCGCCCCTGAGCTTTACTTAAAGCGCTTAGTGGTAGGTGGG TTTGAGCGTGTGTTTGAAATAAACCGTAACTTCCGTAACGAAGGCTTATCAACACGTCATAACCCTGAGTTCACTATGCT TGAGTTCTACCAAGCTTATGCTGACTATCAAGACTTGATGAACCTCACAGAAGAAATGCTGCGTACCGTTGCACAAGATG TATTAGGTACCGCCATCGTTAAGAACACCATCAAAGATACTGAAGGTAACGTAGTCGAAGAGAAAACTTATGACTTTGGC CAGCCTTTCCAACGTTTAACCATGAGTGAAGCGGTCATTAAATACTGGCCTGAAGCAAATGTAGCTGCTATCAACGATCC TGAAGCGCACCTCGATGAGCTAAAAGCCATGGCGAAACAGCTGCACATTAAAGAGCCAGAAGTGGATGGCATTTGGGGTG CTGGTAAGTACTTATGTGAAATTTTTGAAGCAACCGCAGAAGAACAACTTGATCAGCCTACTTTCATTACTGCTTATCCT TGGGAAGTGTCGCCTTTAGCGCGTCGTAACGATGACAATCATTTCGTAACTGACCGTTTTGAGTTCTTCGTAGGCGGCCG TGAATTAGCCAATGGTTTCTCTGAGTTGAATGACTCTGAAGATCAAGAAGCGCGTTTCCGTAAACAAGTAGCTGAGAAAG ATGCAGGCGATGATGAAGCCATGCACTTCGATGACGACTATATTCGTGCTCTTGAATATGGTTTACCGCCAACAGCGGGC GAGGGCATTGGTATCGACCGTTTGGTGATGTTATTCACTGACAGCCCGACGATTAAAGACGTGATCTTGTTTCCGCACAT GAAACCAGAAGTCAGTGGCGACAAGGCTGAATAA Protein sequence : MTEQQQDENKLIAERRAKLSQIRENCKSNGFPNTFRREFYSEDLQAEFGEHEKAALEELGKVVSIAGRILAKRGPFLLLQ DMTGRIQAYASKDTQKDIKARYTSLDIGDIIGVKGELHKSGKGDLYVNMNEYQLLTKSLRPLPEKFHGLADQETKYRQRY VDLITNQQTRETFMIRSKIVTGIRNFLSERKFMEVETPMLQVIPGGATAKPFNTHHNALDIDMYLRIAPELYLKRLVVGG FERVFEINRNFRNEGLSTRHNPEFTMLEFYQAYADYQDLMNLTEEMLRTVAQDVLGTAIVKNTIKDTEGNVVEEKTYDFG QPFQRLTMSEAVIKYWPEANVAAINDPEAHLDELKAMAKQLHIKEPEVDGIWGAGKYLCEIFEATAEEQLDQPTFITAYP WEVSPLARRNDDNHFVTDRFEFFVGGRELANGFSELNDSEDQEARFRKQVAEKDAGDDEAMHFDDDYIRALEYGLPPTAG EGIGIDRLVMLFTDSPTIKDVILFPHMKPEVSGDKAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-130 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_660941.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 7e-131 | 55 |
