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Name : Patl_1087 (Patl_1087) Accession : YP_660667.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Virulence Product : NAD-dependent epimerase/dehydratase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0451 EC number : - Position : 1306704 - 1307696 bp Length : 993 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ppr:PBPRA0207 putative nucleotide sugar epimerase DNA sequence : ATGAAATATTTAGTCACTGGAGCAGCTGGGTTCATTGGAAATTATGTCGCTGAAAAGCTTTGCGCAGAGGGGCATGACGT TATTGGGTTAGACAACCTTAACGATTACTATGACCCAAACCTAAAGTTGGCGAGACTTAAACGCATCGAGCATTGTAAAA CATTTACGTTTGTTAAGGCCGATATTTCTGATCGCAACACTATTGCAGCATTATTTTCTCAAGAAAAATTTGACCGCGTG ATACATTTAGCAGCGCAAGCTGGGGTGCGTTATTCGATTGAAAATCCAATGGCGTATATAGATTCAAACCTAACGGGTAT GGCTACCATTCTCGAAGGTTGTCGTCACAACAATGTCGAGCATTTAGTTTATGCATCTTCTAGTTCTGTTTATGGTGCAA ATAAAAAAATACCGTTTGCCGAAGGTGACCGTGTAGATTATCCGGTTTCACTTTATGCAGCGACCAAGAAGTCGAATGAA CTCATGGCGCATACCTACAGCCATTTATATTCGTTGCCTACAACCGGTCTGCGCTTCTTCACTGTGTATGGCCCCTGGGG CAGACCAGACATGGCGCCATTCTTGTTTACTGATGCTGTGGTAAATGACAGAGCGATTAAAGTTTTTAATGACGGCAAAA TGCAGCGAGACTTCACTTACATTGATGATATCGTCGAAGGAATTTTACGTATCCAAAACGTAATACCGAAACCGCGCGAA GAGTCAAACAGTAGCTCTGAATCTTCGCCTTTCTACAAGCTATACAACATCGGTAACAACACGCCTGTCGAATTAGAAGC GTTTATTGGCTGTATAGAGAATGCGCTAAGCAAAAAAGCGGTGAAAAATTACATGCCAATGCAGGACGGCGATGTCGTAA GAACGTTTGCTGATATTACAAATTTAGAAAGCGAAATCGGCTTTAAGCCCCAAACTGAGCTCCAAGATGGAATCAATAAC TTTGTAGGCTGGTTTAAGCAGTATTATTCGTAG Protein sequence : MKYLVTGAAGFIGNYVAEKLCAEGHDVIGLDNLNDYYDPNLKLARLKRIEHCKTFTFVKADISDRNTIAALFSQEKFDRV IHLAAQAGVRYSIENPMAYIDSNLTGMATILEGCRHNNVEHLVYASSSSVYGANKKIPFAEGDRVDYPVSLYAATKKSNE LMAHTYSHLYSLPTTGLRFFTVYGPWGRPDMAPFLFTDAVVNDRAIKVFNDGKMQRDFTYIDDIVEGILRIQNVIPKPRE ESNSSSESSPFYKLYNIGNNTPVELEAFIGCIENALSKKAVKNYMPMQDGDVVRTFADITNLESEIGFKPQTELQDGINN FVGWFKQYYS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1I | AAA64648.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-86 | 58 |
