Gene Information

Name : troB (RD1_0921)
Accession : YP_681275.1
Strain : Roseobacter denitrificans OCh 114
Genome accession: NC_008209
Putative virulence/resistance : Virulence
Product : zinc ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 891931 - 892764 bp
Length : 834 bp
Strand : -
Note : -

DNA sequence : 
TTGAGGGCCCCCTTGACGATGCATACTGCTGCAACACTGGCAACAACGGGCGGCCGGGCCGCACCCGCATCCACACGTGC
ACCGGAAAGCCCCCTTGCCGTGCGGGGGCTGACCGTCTCTTACGGTGAAAAACCAGCGATCTTCTCGGTGGATGCCGACT
TCCCGGCTCAAGCGATGACCGCGATCATCGGTCCCAACGGCGCGGGTAAATCCACGTTGCTCAAGGCCGCGCTTGGCGTC
ATCCCGCGCCTGTCAGGCGAGGTATCGATCTTTGGCACACCTGTCGAACAAGCCCGTGACCGCATTGCCTATGTTCCACA
ACGCGCCAGCGTGGATTGGGATTTTCCCACCACGGTGATCGACGTTGTGCAGATGGGCCTTTATCGCAAGGTCGGGCTCC
TTGGTCGCTTGTCCGGCGCGATGACAGCGCAGGCACGCGAGTGCCTTGATCGGGTCGGCATGGCTGATTTCGCCCACCGC
CAGATCGGCCAATTGTCCGGCGGCCAGCAACAACGCGTGTTCCTTGCGCGCGCTTTGGCGCAGGATGCCGACCTCTACCT
GCTGGATGAACCCTTTGCAGGCGTGGATGCCGCCACCGAACGCGCCATCATCGACGTGCTGAAACTGCTTAAGGCCGAAG
GTAAAGCCGTGGTCGCTGTGCATCACGATCTCTCCACCGTGGCCGACTATTTCGACCATGTGTTTCTGATCAATGTGCGC
CGCATCGCCGAGGGGCCCGTGGCGACGACCTTCACTCCGGAGAACCTCAGCGCCGCCTATGGCGGGCGTCTGGCAGCCAC
GCATATGGCGGAACTGGCAGGGGTCGCGTCGTGA

Protein sequence : 
MRAPLTMHTAATLATTGGRAAPASTRAPESPLAVRGLTVSYGEKPAIFSVDADFPAQAMTAIIGPNGAGKSTLLKAALGV
IPRLSGEVSIFGTPVEQARDRIAYVPQRASVDWDFPTTVIDVVQMGLYRKVGLLGRLSGAMTAQARECLDRVGMADFAHR
QIGQLSGGQQQRVFLARALAQDADLYLLDEPFAGVDAATERAIIDVLKLLKAEGKAVVAVHHDLSTVADYFDHVFLINVR
RIAEGPVATTFTPENLSAAYGGRLAATHMAELAGVAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-40 48
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 2e-40 48
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-37 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-37 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-37 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-37 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-37 44
unnamed CAD33755.1 putative ABC transporter ATP-binding protein Virulence PAI I 536 Protein 8e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_681275.1 zinc ABC transporter ATP-binding protein BAC0400 Protein 6e-57 60
troB YP_681275.1 zinc ABC transporter ATP-binding protein BAC0350 Protein 6e-38 45
troB YP_681275.1 zinc ABC transporter ATP-binding protein BAC0440 Protein 9e-39 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_681275.1 zinc ABC transporter ATP-binding protein VFG0526 Protein 5e-38 45
troB YP_681275.1 zinc ABC transporter ATP-binding protein VFG1496 Protein 5e-31 41