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Name : clpB (RD1_0721) Accession : YP_681098.1 Strain : Roseobacter denitrificans OCh 114 Genome accession: NC_008209 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 696573 - 699191 bp Length : 2619 bp Strand : + Note : - DNA sequence : ATGGACTTGAGCAAGTTCACGGAACGGTCGCGCGGTTTCATCCAGGCGGCACAGACGATAGCGGCGCGCGAAAGCCATCA GAGGCTGGCCGCCGAACACTTACTGAAAGCATTGATGGACGATGATCAGGGGCTGGCCAGCAATCTGATCTCGGCCGCGG GCGGGCAACCGGCGCGGGTTCTGGAGTCTGTTGATCTGGCACTGGGTAAAATGCCCAAGGTGACAGGCGATGCGGCACAG GTATATGTGGATGGCACCACGACCAAGGTTCTCGCCGAGGCGGAGCAACTGGCCAAGAAGGCCGGTGACAGCTTTGTCCC CGTCGAACGTATATTGATGGCGCTGTGCATGGTGAAATCGGGGGCCAAAACGGCCTTGGATGCAGGAAATGTAACTGCGC AGGCGTTGAACGGTGCGATCAATGATGTGCGCAAGGGGCGCACAGCGGACACGGCCACTGCCGAAGAAGGCTATGACGCG TTGAAGAAATACGCGATGGACCTGACGGAGCGGGCCGAGGCGGGCAAGATCGACCCGATTATCGGGCGGGACGAGGAAAT CCGCCGCGCCATGCAGGTTCTGAGCCGCCGGACCAAGAACAACCCGGTGCTGATCGGGGAGCCGGGTGTCGGTAAAACCG CGATTGCCGAAGGATTGGCCCTGCGGATCGTGAACGGCGATGTGCCTGAATCCCTGCGCAACAAGAAACTGTTGGCGCTG GACATGGGCGCGTTGATCGCCGGTGCCAAATTCCGCGGTGAATTCGAAGAGCGTCTTAAGGCGGTGCTGACCGAAGTCAC CGAGGCGGCGGGGGAGATCATCCTGTTCATTGACGAGATGCACACGCTTGTCGGCGCGGGCAAGGCGGATGGCGCGATGG ACGCGGCCAACCTCATCAAACCTGCCCTTGCGCGCGGTGAACTGCATTGTGTCGGCGCAACCACGCTGGATGAATACCGC AAATACGTCGAGAAAGACGCGGCACTGGCCCGTCGGTTCCAGCCTGTGATGGTTCAGGAGCCAACGGTCGAGGATACCGT TTCGATCCTGCGCGGCATCAAGGAGAAATACGAACTGCACCACGGTGTGCGGATTTCGGATTCGTCTTTGGTTGCCGCTG CGACGCTGAGCCATCGGTATATCACGGACCGGTTTTTGCCGGATAAGGCGATTGACCTGATGGATGAGGCGGCGTCGCGG TTGCGCATGGAAGTGGACAGCAAGCCCGAAGAGCTGGATGCGATCGACCGTCAGATCCTGCAGATGCAGATCGAGGCCGA AGCGCTTCGGCTTGAGGATGACGCGGCGAGCAAGGACCGTCTTGAAACGCTCGAAAAGGAGTTGGCCGAATTGCAGGAGC GCAGTGATGCGATGACCGCGAAATGGCAGGCAGAGCGGGACAAGATGGCGGGTGCGCGCGACCTCAAGGAGCAGCTTGAT CACGCCCGCGCGGAGCTGGAAATCGCCAAGCGCGAGGGGAACCTCGGCCGGGCGGGCGAATTGTCCTATGGTGTGATCCC ACAACTGGAAAAGCAACTGGAGGCTGCCGAGGGGCGGGACGACGGCGACGTGATGGTCGAAGAGGCCGTGCGCCCTGAGC AGATCGCCAGCGTGGTGGAGCGTTGGACCGGTATCCCGGCGGGCAAGATGCTGGAAGGCGAACGCGATAAACTGCTGCGC ATGGAAGATCAGTTGCATGGCCGCGTGATCGGGCAGAATTCCGCGGTGCGGGCGATTTCCAACGCGGTGCGGCGTGCCCG CGCGGGTCTGAACGATGAGAACCGGCCTTTGGGTTCGTTCCTGTTCCTCGGGCCAACCGGTGTTGGTAAAACCGAATTGA CCAAGGCGGTCGCGGAATTCCTGTTTGACGATGACAATGCGATGGTGCGCATCGACATGTCGGAGTTCATGGAAAAACAC GCGGTTGCCCGACTGATCGGGGCGCCTCCCGGATATGTCGGCTATGATGAGGGCGGTGTGCTGACCGAAGCTGTGCGGCG CAGACCCTATCAGGTGGTTCTGTTCGATGAGGTTGAAAAGGCCCATCCGGATGTCTTCAACGTGCTGTTGCAGGTGCTGG ACGACGGGGTCTTGACCGACGGTCAGGGTCGCACGGTGGATTTCAAGCAAACCTTGATCGTGCTGACGTCAAACCTTGGG GCGCAGGCGCTCAGCCAGCTGCCCGACGGGGCGGATGCCTCTGCGGCCAAGCGCGATGTGATGGATGCCGTGCGCGCCCA TTTCCGGCCTGAGTTCCTGAACCGTCTGGACGAGACGATCATCTTTGATCGCCTTGGTCGGGCCGACATGGACGGAATCG TGGAAATTCAGATGGCGCGTCTGCTCAAGCGGCTGGCCGGGCGCAAGATCGCGCTGGAACTGGATGACGCGGCGCGCATG TGGCTTGCGGATGAAGGGTATGACCCCGTGTTCGGCGCAAGGCCGTTGAAACGTGTGATACAGCGCGCCTTGCAGGACCC GCTTGCCGAGATGATTCTGGCAGGGGACGTCAAGGACGGTGATGTCATTCAGGTCAGTGTCGGCAGCGAAGGGCTGCTGA TCGGAGACCGCGTCGCGGCCACCAACAGGCCCAAGCCGGATGAAGCGGTCGTACACTGA Protein sequence : MDLSKFTERSRGFIQAAQTIAARESHQRLAAEHLLKALMDDDQGLASNLISAAGGQPARVLESVDLALGKMPKVTGDAAQ VYVDGTTTKVLAEAEQLAKKAGDSFVPVERILMALCMVKSGAKTALDAGNVTAQALNGAINDVRKGRTADTATAEEGYDA LKKYAMDLTERAEAGKIDPIIGRDEEIRRAMQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLRNKKLLAL DMGALIAGAKFRGEFEERLKAVLTEVTEAAGEIILFIDEMHTLVGAGKADGAMDAANLIKPALARGELHCVGATTLDEYR KYVEKDAALARRFQPVMVQEPTVEDTVSILRGIKEKYELHHGVRISDSSLVAAATLSHRYITDRFLPDKAIDLMDEAASR LRMEVDSKPEELDAIDRQILQMQIEAEALRLEDDAASKDRLETLEKELAELQERSDAMTAKWQAERDKMAGARDLKEQLD HARAELEIAKREGNLGRAGELSYGVIPQLEKQLEAAEGRDDGDVMVEEAVRPEQIASVVERWTGIPAGKMLEGERDKLLR MEDQLHGRVIGQNSAVRAISNAVRRARAGLNDENRPLGSFLFLGPTGVGKTELTKAVAEFLFDDDNAMVRIDMSEFMEKH AVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTDGQGRTVDFKQTLIVLTSNLG AQALSQLPDGADASAAKRDVMDAVRAHFRPEFLNRLDETIIFDRLGRADMDGIVEIQMARLLKRLAGRKIALELDDAARM WLADEGYDPVFGARPLKRVIQRALQDPLAEMILAGDVKDGDVIQVSVGSEGLLIGDRVAATNRPKPDEAVVH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 4e-166 | 44 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-104 | 43 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 2e-101 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 2e-101 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_681098.1 | ATP-dependent Clp protease, ATP-binding subunit ClpB | VFG2076 | Protein | 6e-122 | 44 |
| clpB | YP_681098.1 | ATP-dependent Clp protease, ATP-binding subunit ClpB | VFG2084 | Protein | 6e-106 | 42 |
