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Name : RD1_3452 (RD1_3452) Accession : YP_683628.1 Strain : Roseobacter denitrificans OCh 114 Genome accession: NC_008209 Putative virulence/resistance : Unknown Product : transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 3319831 - 3320646 bp Length : 816 bp Strand : + Note : - DNA sequence : ATGTTTGGGTTTGTGGCGAAGCACCGAGGGGTCTGGCCAGTGAGTTGGATGTGTGATGCGCTCGGTGTGTCACGAAGCGG CTTTCATGCCTGGCTGACGCGACCGCGCAGCGACCGGTCTATTCGCGACGAAGAGCTTTCGGCGGCGATCCGTGCGAGCT TTCTGCGATCGGACCGAACCTATGGAGCCCGACGGGTCTGGCACGATCTTCTCGAAGAAGGTTATGCCTGTGGCCTGCAT TGCGTTGAACGATTGATGCGACAAGCAGCGTTCAAGGCCCGCCCCAAGCGTCGGCAACCGCCAAAAGACCAAGGCATGAG GTCGGTCATAGCTGCCAACGTGCTTGAACGAGAGTTTGATGCGGATGGGCCGAACCAGAAATGGGTGGCCGACTTCACCT ATGTCTGGACCGCGCAAGGGTGGCTCTACGTTGCAGCCGTCATCGATCTGTTCTCGCGGCGTGTCGTTGGCTGGTCAATG AGCGAACAAATGACGTCTCAGATGGTCACGGACGCTCTGATCATGGCGATCTGGCGCAGAGGCAGGCCCGACGAGTTGCT GCACCATTCCGACCAGGGCAGCCAATACACCAGTGAGCCGTTCCAGCGACTGATGGCCGATCACGGCATCACCTGTTCGA TGAGCCGTTCAGGGAATGTCTGGGACAACGCTGCAATGGAAAGCTTCTTCTCTTCGCTTAAGACAGAACGGATCAAACGC AAAACCTACAGAACCAGAAAGCACGCGCGCGCAGATGTCTTCGATTACATCGAACGCTTCTACAACCCGAAGCGTCGCCA CTCGACCATCGGCTAG Protein sequence : MFGFVAKHRGVWPVSWMCDALGVSRSGFHAWLTRPRSDRSIRDEELSAAIRASFLRSDRTYGARRVWHDLLEEGYACGLH CVERLMRQAAFKARPKRRQPPKDQGMRSVIAANVLEREFDADGPNQKWVADFTYVWTAQGWLYVAAVIDLFSRRVVGWSM SEQMTSQMVTDALIMAIWRRGRPDELLHHSDQGSQYTSEPFQRLMADHGITCSMSRSGNVWDNAAMESFFSSLKTERIKR KTYRTRKHARADVFDYIERFYNPKRRHSTIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpB | CAB61574.1 | transposase B | Not tested | HPI | Protein | 3e-37 | 46 |
| trp1329B | CAB46576.1 | IS1329 transposase B | Not tested | HPI | Protein | 2e-37 | 43 |
| insF | CAC43414.1 | transposase of insertion element IS3 | Not tested | PAI III 536 | Protein | 6e-44 | 42 |
| unnamed | AAL57581.1 | transposase 1 | Not tested | LEE | Protein | 8e-44 | 42 |
| ECO111_3732 | YP_003236068.1 | putative IS3 transposase InsF | Not tested | LEE | Protein | 8e-43 | 42 |
| unnamed | AAL57519.1 | transposase 1 | Not tested | LEE | Protein | 8e-44 | 42 |
| l7094 | CAD33743.1 | ORF B protein | Not tested | PAI I 536 | Protein | 5e-30 | 42 |
| orfB | CAE85178.1 | OrfB protein, IS911 | Not tested | PAI V 536 | Protein | 5e-30 | 42 |
| orfB | AGK07032.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 2e-42 | 41 |
| orfB | AGK07090.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 2e-42 | 41 |
| tnpA1133 | ACK44540.1 | TnpA | Not tested | SGI1 | Protein | 2e-42 | 41 |
| CDCE8392_1774 | YP_005134308.1 | transposase-like protein | Not tested | Not named | Protein | 2e-23 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RD1_3452 | YP_683628.1 | transposase | VFG1631 | Protein | 4e-44 | 42 |
| RD1_3452 | YP_683628.1 | transposase | VFG1484 | Protein | 3e-30 | 42 |
