|
Name : RD1_3449 (RD1_3449) Accession : YP_683625.2 Strain : Roseobacter denitrificans OCh 114 Genome accession: NC_008209 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 3316002 - 3316814 bp Length : 813 bp Strand : - Note : - DNA sequence : ATGAAGACCAAGGGCTACAATCAGAAACGGGCCTGTTCCTTGGCCGGGATCGATCCGCGTGTTTATCGGCGAAGGTCGAA GCGCCCCGCCGACACGGAATTGCGGGCCAGGATGAAGGAACTGGCGTCCGAGCGGCGACGGTTCGGATATCGCCGTCTGC ATATCCTACTGAAGCGCGAGGGATGGCAAGTGAACTGGAAGAAGCTGTACCGGCTCTACCGCGAAGAAGGGTTAACCGTT CGCAAACGGGGCGGGCGCAAGCGTGCTGTGGGCACCAGGACGCCTATGGCGATCCCGCAGGGGCCGAACCAGCGATGGTC ACTCGACTTCATGTCGGATGCATTGGAGGATGGTCGCCGGTTCCGGGTTTTGAATGTGATCGATGACTTCAGCCGGGAAT GCCTGGCCGCTGTGGTGGACACATCCATCGGAGGCACGCGTGTTGCCCGTGAGCTGGATCGCATCGCAGAACTCCGTGGC TATCCCTGCATGGTGGTCTCAGACAACGGCACAGAACTGACCAGCAATGCGATGCTGAAATGGCAGGAAAACCGCAAAGT TGGTTGGCACTACATCGCGCCAGGAAAGCCGATGCAGAACGGTCTTGTCGAAAGCTTCAACGGGCGAATGCGCGAAGAAT GCCTCAATGAACACCTGTTCCCGTCTTTGCGCCATGCCCGCCGCATGATTGCGGCATGGCGCGGCGACTACAATCACTAC CGCCCACATTCGAGCCTCGACGGGCTCACGCCGTGGGAGTATCACCAACGGTCAAAGGAAGACCAAAACCTGAACAGTGC TAACCTAAAGTAG Protein sequence : MKTKGYNQKRACSLAGIDPRVYRRRSKRPADTELRARMKELASERRRFGYRRLHILLKREGWQVNWKKLYRLYREEGLTV RKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVLNVIDDFSRECLAAVVDTSIGGTRVARELDRIAELRG YPCMVVSDNGTELTSNAMLKWQENRKVGWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHARRMIAAWRGDYNHY RPHSSLDGLTPWEYHQRSKEDQNLNSANLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13540.1 | insertion sequence IS407 OrfB | Not tested | PAGI-8 | Protein | 4e-54 | 49 |
| unnamed | ABR13352.1 | insertion sequence IS407 OrfB | Not tested | PAGI-5 | Protein | 2e-39 | 48 |
| trp1400B | CAB46580.1 | IS1400 transposase B | Not tested | HPI | Protein | 2e-37 | 42 |
| XCV0439 | YP_362170.1 | ISRSO12 transposase (fragment) | Not tested | Hrp PAI | Protein | 3e-38 | 41 |
