Gene Information

Name : fliI (RD1_0251)
Accession : YP_680664.1
Strain : Roseobacter denitrificans OCh 114
Genome accession: NC_008209
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 252232 - 253581 bp
Length : 1350 bp
Strand : -
Note : -

DNA sequence : 
ATGAACCAGCCGATTCCCTTCGACGGTCTCACTGCGCAGATCACTGAATTGAACCCTGTGCGGTCAATTGGTCGCGTTTG
CCGTGTCGAGGCCGGGGTGATCCATATATCCGGGCTCGCGGGAAAGGCCCGGATTGGTGATCTGGTCGTTGTATACCGTC
AAGGTGAGCCGCTTTCTGGCGAGATCCTGCAGCTGGACGGGGACACTCTGGTTATCCTGCCGGATCAGGATGCAGAGGGT
GTCGCCCTTAATGACCGCGCAGCACTTCTGGAGGCGCGCGGCATCGCGCCATCGCAGGGTTGGATTGGCCGAATCATTGA
CCCGTTCGGAAATCCAATTGACGGAAAACCGCTGCTGCGCGGCGCAGAGGCAAGGAGCCTGCGGAGCGCGCCCCCCGAGC
CCGCCTTGCGTCGCCCGATGGGTACACGCCTTAACACCGGCATGTCCGTTTTGAACACCATGCTACCGGTGGTAAAAGGT
CAGCGTGTCGGACTTTTTGCAGGATCGGGTGTGGGAAAGTCCAGTTTGTTGGGGCATCTTGCACAGAACATGACTGCAGA
TGTTGTGGTAGTCGCCCTCATCGGAGAGCGTGGTCGCGAGCTACGTCATTTCGTAGAGGAAGTATTGGGGCCGGAAGGCC
TCAAACGCTCCGTCGTGATCTGCGCCACATCCGATCAGTCGCCCCTCATCAGAAGGCGGTGCGCCTGGGCTGCCATGTCG
GTTGCCGAACACTTCCGCGACATGGGCCTGTCGGCTCTTATCCTTGCAGATTCCATCACGCGTTTTGCAGAAGCGCACCG
CGAAGTCGCTGTCGCATCAGGCGAAGCACCTGTTCTGCGCGGCTATCCGCCATCCACTGCACATCTGATAATGTCGCTGT
GTGAACGCGCGGGACCCGGAGAAGGCGCGCAGGGCGATATAACGGGCATTTTCAGCGTTCTGGTCGCAGGCTCGGATATG
GAGGAGCCCATCGCTGATATCCTGCGCGGGGTCCTCGATGGCCATATCGTGCTCAACAGAGAAATCGCAGAACGCGGCAG
ATATCCTGCCATTGACGTGCTCAAGTCGATTTCGCGCAGCCTGCCAGCAGCCGCAGATGACATAGAAAACGAGCTGATCT
CAATTGTCAGACGCTATTTGTCTATCTACGAGCAGAATGAGATGATGATTCGGGCCGGTCTTTATTCGCAGGGCTCGGAT
CCGGATATCGATGCGGCAATTCAGGTCTGGTCGGACTTGGATGCCTTCTTCGCAAAACCGGAGAAGCAAGATGTCTCGAA
CAGTTTCTCACAACTTGAGCTGCTATTGAGACGCAACAAGATACAGACGCGACCGACCATGGTGCAGTGA

Protein sequence : 
MNQPIPFDGLTAQITELNPVRSIGRVCRVEAGVIHISGLAGKARIGDLVVVYRQGEPLSGEILQLDGDTLVILPDQDAEG
VALNDRAALLEARGIAPSQGWIGRIIDPFGNPIDGKPLLRGAEARSLRSAPPEPALRRPMGTRLNTGMSVLNTMLPVVKG
QRVGLFAGSGVGKSSLLGHLAQNMTADVVVVALIGERGRELRHFVEEVLGPEGLKRSVVICATSDQSPLIRRRCAWAAMS
VAEHFRDMGLSALILADSITRFAEAHREVAVASGEAPVLRGYPPSTAHLIMSLCERAGPGEGAQGDITGIFSVLVAGSDM
EEPIADILRGVLDGHIVLNREIAERGRYPAIDVLKSISRSLPAAADDIENELISIVRRYLSIYEQNEMMIRAGLYSQGSD
PDIDAAIQVWSDLDAFFAKPEKQDVSNSFSQLELLLRRNKIQTRPTMVQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-60 43
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-60 42
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 8e-61 42
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-61 42
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-62 42
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-62 42
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-62 41
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 5e-62 41
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-62 41
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 6e-61 41
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-61 41
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-61 41
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-61 41
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-61 41
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-61 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_680664.1 flagellum-specific ATP synthase VFG2144 Protein 6e-67 41
fliI YP_680664.1 flagellum-specific ATP synthase VFG0515 Protein 9e-63 41
fliI YP_680664.1 flagellum-specific ATP synthase VFG1254 Protein 1e-64 41