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Name : RD1_2228 (RD1_2228) Accession : YP_682505.1 Strain : Roseobacter denitrificans OCh 114 Genome accession: NC_008209 Putative virulence/resistance : Unknown Product : CP4-like integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 2130698 - 2131927 bp Length : 1230 bp Strand : + Note : - DNA sequence : TTGGGGGTATCGGCAGAACACAAAAATCACGATACCCCCAAAATGCCTTTAAGCGACGCCAAGATTCGAAACCTCAAAGC GCGCGACAAGCAATACAAAGTCGCTGATTTCGACAGCCTGTATGTGCTGGTCAAACCGAACGGCTCGAAGCTTTGGCAGA TGAAGTACCGCTTGGATGGACGCGAAAAAACGCTCTCCATCGGCGCTTACCCGGCTGTGTCGTTGCAGCAAGCCAGAAAG TCGCGGGATGCAGCCCGTTCGATGATTGCCAATGGTGAAGACCCTTCCGAAGAGAAGCAGGAACAAAAGAGACTGAAGCG CGAGGCCAGTGGACAGACCTTCGAGAAAATTGGCGGCATGTTTCTTGATAAGCAGCGCAAGGAGGGAAAGTCCAAGGCTA CGCTCGACAAGACCGCATATCATCTGAAGCTCGCGAACCACGACTTTGGCAAGAAGCCCATAACGGCGATAACTGCACCA ATGATCCTGCGCACGCTGCGCAAGGTCGAAGCGAAGGGCAACTATGAGACGGCGCATCGCCTTCGGGCGCGGATCGGGTC TGTGTTCCGTTATGCGGTTGCAAGTGGCCTCGCAGAAACCGATCCGACCTATGCTTTGCGCGATGCGCTCATCCGTCCGA CCCGGCAGCATCGTGCTGCAATCACGGACCCAACAGCATTCGGCGCTTTGCTGCGCGAAATTGATGTCTTCGATGGCCAA GTGACAACTCGCATCGCGCTTCAGCTTTTGGCCCTACTCGCCCAGCGCCCCGGAGAGTTGCGGCACGCCAAATGGAGCGA GTTCGATGAGGCGGACAAAGTGTGGGCAATTCCGGCTGGCAAAATGAAAATGCGCCGCGATCACTTTGTACCTCTCGCAG ATCAAGCGATTACGTTGCTGAACGAGCTTCGCCCTCTGACCGGCGAAAGCGAGTACCTTTTCCCTTCCCTTCGGTCATGG CACCGGCCAATGAGCGAAAACACTATGAACGCGGCACTTCGGCGTATGGGATACTCCGGCGATGAAATGACCGCCCACGG TTTCCGCGCCACGTTTTCCACGCTGGCCAATGAAAGCGGTCTCTGGAACCCAGACGCAATTGAACGAGCATTGGCGCATG AAGAACGCAACGAAGTGCGCAGAGCCTATGCGCGCGGGGCACACTGGGAAGAGCGCGTGAAATTATCCGACTGGTGGGCT GGAAGACTGGACGATTTCCGTTCAAGCTGA Protein sequence : MGVSAEHKNHDTPKMPLSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYRLDGREKTLSIGAYPAVSLQQARK SRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGMFLDKQRKEGKSKATLDKTAYHLKLANHDFGKKPITAITAP MILRTLRKVEAKGNYETAHRLRARIGSVFRYAVASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQ VTTRIALQLLALLAQRPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLLNELRPLTGESEYLFPSLRSW HRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESGLWNPDAIERALAHEERNEVRRAYARGAHWEERVKLSDWWA GRLDDFRSS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ECO111_3718 | YP_003236059.1 | putative integrase | Not tested | LEE | Protein | 2e-62 | 42 |
| c5216 | NP_757064.1 | prophage P4 integrase | Not tested | PAI II CFT073 | Protein | 1e-63 | 42 |
| APECO1_3534 | YP_854214.1 | P4-like integrase | Not tested | PAI I APEC-O1 | Protein | 9e-64 | 42 |
| S4822 | NP_838459.1 | P4-type integrase | Not tested | SHI-1 | Protein | 3e-64 | 42 |
| SF2964 | NP_708738.1 | P4-type integrase | Not tested | SHI-1 | Protein | 3e-64 | 42 |
| ORF_1 | AAZ04412.1 | phage integrase | Not tested | PAI I APEC-O1 | Protein | 6e-64 | 42 |
| intP4 | CAE85151.1 | CP4 integrase protein | Not tested | PAI V 536 | Protein | 5e-64 | 42 |
| int | AAT48697.1 | CP4-like integrase | Not tested | PAI I 4787 | Protein | 3e-63 | 42 |
| ECUMN_3322 | YP_002414004.1 | integrase | Not tested | Not named | Protein | 9e-64 | 42 |
| int | AAL51003.1 | CP4-like integrase | Not tested | LEE | Protein | 2e-63 | 42 |
| int | AAK16198.1 | Int | Not tested | PAI-I AL862 | Protein | 7e-64 | 42 |
| c3556 | NP_755431.1 | prophage P4 integrase | Not tested | PAI I CFT073 | Protein | 2e-64 | 42 |
| int | ADD91747.1 | P4 integrase | Not tested | PAI-I AL862 | Protein | 7e-64 | 42 |
| int | AAK00456.1 | Int | Not tested | SHI-1 | Protein | 5e-58 | 41 |
| int-phe | AAL57571.1 | CP4-like integrase | Not tested | LEE | Protein | 2e-63 | 41 |
| int | AAL51028.1 | CP4-like integrase | Not tested | LEE | Protein | 2e-63 | 41 |
| int-phe | AAL60261.1 | Int-phe | Not tested | LEE | Protein | 2e-63 | 41 |
| Z4313 | NP_289539.1 | pathogenicity island integrase | Not tested | OI-122 | Protein | 1e-62 | 41 |
| ECO103_3550 | YP_003223418.1 | integrase | Not tested | LEE | Protein | 3e-63 | 41 |
| ECO26_5300 | YP_003232178.1 | integrase | Not tested | LEE | Protein | 3e-63 | 41 |
| int | CAC81896.1 | integrase | Not tested | LEE II | Protein | 4e-57 | 41 |
| SESS1296_03598 | AFO66301.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 6e-66 | 41 |
| SESS1635_03816 | AFO66367.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 6e-66 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RD1_2228 | YP_682505.1 | CP4-like integrase | VFG0626 | Protein | 1e-64 | 42 |
| RD1_2228 | YP_682505.1 | CP4-like integrase | VFG1693 | Protein | 9e-65 | 42 |
