Gene Information

Name : RD1_1852 (RD1_1852)
Accession : YP_682150.2
Strain : Roseobacter denitrificans OCh 114
Genome accession: NC_008209
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1774522 - 1775334 bp
Length : 813 bp
Strand : +
Note : -

DNA sequence :
ATGAAGACCAAGGGCTACAATCAGAAACGGGCCTGTTCCTTGGCCGGGATCGATCCGCGTGTTTATCGGCGAAGGTCGAA
GCGCCCCGCCGACACGGAATTGCGGGCCAGGATGAAGGAACTGGCGTCCGAGCGGCGACGGTTCGGATATCGCCGTCTGC
ATATCCTACTGAAGCGCGAGGGATGGCAAGTGAACTGGAAGAAGCTGTACCGGCTCTACCGCGAAGAAGGGTTAACCGTT
CGCAAACGGGGCGGGCGCAAGCGTGCTGTGGGCACCAGGACGCCTATGGCGATCCCGCAGGGGCCGAACCAGCGATGGTC
ACTCGACTTCATGTCGGATGCATTGGAGGATGGTCGCCGGTTCCGGGTTTTGAATGTGATCGATGACTTCAGCCGGGAAT
GCCTGGCCGCTGTGGTGGACACATCCATCGGAGGCACGCGTGTTGCCCGTGAGCTGGATCGCATCGCAGAACTCCGTGGC
TATCCCTGCATGGTGGTCTCAGACAACGGCACAGAACTGACCAGCAATGCGATGCTGAAATGGCAGGAAAACCGCAAAGT
TGGTTGGCACTACATCGCGCCAGGAAAGCCGATGCAGAACGGTCTTGTCGAAAGCTTCAACGGGCGAATGCGCGAAGAAT
GCCTCAATGAACACCTGTTCCCGTCTTTGCGCCATGCCCGCCGCATGATTGCGGCATGGCGCGGCGACTACAATCACTAC
CGCCCACATTCGAGCCTCGACGGGCTCACGCCGTGGGAGTATCACCAACGGTCAAAGGAAGACCAAAACCTGAACAGTGC
TAACCTAAAGTAG

Protein sequence :
MKTKGYNQKRACSLAGIDPRVYRRRSKRPADTELRARMKELASERRRFGYRRLHILLKREGWQVNWKKLYRLYREEGLTV
RKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVLNVIDDFSRECLAAVVDTSIGGTRVARELDRIAELRG
YPCMVVSDNGTELTSNAMLKWQENRKVGWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHARRMIAAWRGDYNHY
RPHSSLDGLTPWEYHQRSKEDQNLNSANLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13540.1 insertion sequence IS407 OrfB Not tested PAGI-8 Protein 4e-54 49
unnamed ABR13352.1 insertion sequence IS407 OrfB Not tested PAGI-5 Protein 2e-39 48
trp1400B CAB46580.1 IS1400 transposase B Not tested HPI Protein 2e-37 42
XCV0439 YP_362170.1 ISRSO12 transposase (fragment) Not tested Hrp PAI Protein 3e-38 41