Gene Information

Name : YPA_0057 (YPA_0057)
Accession : YP_649971.1
Strain : Yersinia pestis Antiqua
Genome accession: NC_008150
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator BasR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 73479 - 74141 bp
Length : 663 bp
Strand : +
Note : response regulator in two-component regulatory system with BasS

DNA sequence : 
ATGAAATTACTGATTGTTGAAGATGATGAACTGCTACAACGCGGTATAGCCATGGCGCTGACCAGTGAAGGCTATGTCTG
CGACTGCGCAGCTACCGCCGCCGAGGCTCACAGTTTGCTGCAAACCAGTCAGTACAGCATGATTATTCTTGATCTCGGCC
TGCCGGATCAGGATGGTACTCTGTTATTACGTCAATGGCGTCGCCAACATGTCACCCTGCCAGTACTCATCCTCACCGCA
CGTGATGCGCTTGAAGACAGGGTTGACGGGCTGGATGCCGGTGCTGACGATTATCTTGTCAAACCTTTTGCCTTGGCTGA
ATTACTGGCCCGGGTACGTGCTCTCATCCGCCGTTATCAGGGGCAGAGTGACAACCTGGTACAGCAAGATGACCTGAGCC
TTAACTTGTCGACACAACAAGTCTGTTTACAAGGGCAGCCATTAGAGATAACCCCTAAAGAGTTTGCGATCCTCTCACGT
CTAATCATGCGAGCTGGGCAAACAGTTAACCGCGAGTTGTTACAACAGGATCTATATACCTGGAATGACGACCTTAGCTC
TAATACGCTGGAAGTTCATATTCATAATTTGCGACGCAAACTGGGTAAAGATCGTATCCGAACCGTTCGAGGTATTGGTT
ATCGATTGGAAGCCTTATCATGA

Protein sequence : 
MKLLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMIILDLGLPDQDGTLLLRQWRRQHVTLPVLILTA
RDALEDRVDGLDAGADDYLVKPFALAELLARVRALIRRYQGQSDNLVQQDDLSLNLSTQQVCLQGQPLEITPKEFAILSR
LIMRAGQTVNRELLQQDLYTWNDDLSSNTLEVHIHNLRRKLGKDRIRTVRGIGYRLEALS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-34 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-25 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-24 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPA_0057 YP_649971.1 DNA-binding transcriptional regulator BasR BAC0487 Protein 2e-56 66
YPA_0057 YP_649971.1 DNA-binding transcriptional regulator BasR NC_002516.2.879194.p Protein 8e-27 42
YPA_0057 YP_649971.1 DNA-binding transcriptional regulator BasR CP001918.1.gene5135. Protein 3e-14 41
YPA_0057 YP_649971.1 DNA-binding transcriptional regulator BasR CP000647.1.gene4257. Protein 7e-14 41
YPA_0057 YP_649971.1 DNA-binding transcriptional regulator BasR CP001138.1.gene4273. Protein 3e-14 41
YPA_0057 YP_649971.1 DNA-binding transcriptional regulator BasR BAC0533 Protein 7e-14 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPA_0057 YP_649971.1 DNA-binding transcriptional regulator BasR VFG0473 Protein 4e-50 57
YPA_0057 YP_649971.1 DNA-binding transcriptional regulator BasR VFG0596 Protein 1e-25 44