Gene Information

Name : YPA_0385 (YPA_0385)
Accession : YP_650298.1
Strain : Yersinia pestis Antiqua
Genome accession: NC_008150
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 449658 - 450716 bp
Length : 1059 bp
Strand : +
Note : -

DNA sequence :
GTGTGGATCACTATTGCACCGTTCGTTACAGTTGCCAGAGTAAAACGTGACGAGGCTAAGAAGATTGTCGCTGGTGGCGG
TGATCCCAGCCAGAACAAACAACAGGAAAAACTAGCCCGACAAGGTGAAGCGACGAATACCTTTGAGGCTATCACCCGAG
AGTGGTATCAACGGCGTTACGATAGGTGGTCTGAATCTTATCGTTTAGAAATGATGAGCACGTTTGAAAGTGACGTTTTT
CCATATATCGGTTACCGGCCAATCAAAGAAATTAAACCGCTTGAGCTGATGGCCGTGCTGTCCAAGTTAGAAAAACGGGG
TGCCACTGAGAAAATGCGTAAGGTTCGGCAGCGATGTGGTGAGGTTTGGAAATACGCCATCATCACAGGCCGAGCCGAAT
ATAATCCCGCCCCTGACCTTGCCAGTGCTTTTGCTCCTCATAAACGCGAACACTATCCACATCTTACGATTAATGAAATC
CCTGAATTTCTTTCCAGCCTTGCCAGTTATAGCGGCAGCATGTTGGTTAAGTTGGCTATGCGGTTGTTGATCCTCACCGG
TACCCGCCCAGGTGAATTGCGGCAGGCCGAATGGGCAGAGTTTGATTTTGATAATGCCTTATGGGAGATCCCCGCGGTGC
GAATGAAGATGCGTCGGCCACATATGGTGCCGCTTCCGGATCAAGCCATTACGATACTAAAGCAGATTCAACCTATCAGC
GGGCGCTATCAGTTTGTGTTCCCTGGCAGAATACAGCACAGCAAGCCTATCAGTGAGATGACACTCAATGTACTAATCCG
ACGTATCGGTTATGGCGGCAGAGCCACTGGACATGGTTTTCGCCACACAATGAGCACTATTTTGCATGAGCAAGGTTTCA
ATACGGCCTGGATAGAAACACAACTGGCTCATGTCGATAAAAACAGTATTCGCGGTACTTATAATCACGCTCAATATCTT
GATGGACGCCGTGAAATGCTTCAATGGTATGCCGACTATATGGATAGTCTGGAAAATGGCGAGAATGTGATTCATGGCAG
ATTTGGGAAACGGGCATAG

Protein sequence :
MWITIAPFVTVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYRLEMMSTFESDVF
PYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEI
PEFLSSLASYSGSMLVKLAMRLLILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPIS
GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKNSIRGTYNHAQYL
DGRREMLQWYADYMDSLENGENVIHGRFGKRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-104 64
int CAC39282.1 integrase Not tested LPA Protein 1e-104 64
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-104 64
int ACU09430.1 integrase Not tested LEE Protein 2e-104 64
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-104 64
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-104 64
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 7e-104 64
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 9e-104 64
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 9e-104 64
int AAD44730.1 Int Not tested SHI-2 Protein 6e-103 63
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-98 60
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-101 59
intA AAB00935.1 integrase A Not tested vap locus Protein 2e-48 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPA_0385 YP_650298.1 integrase VFG0783 Protein 9e-105 64
YPA_0385 YP_650298.1 integrase VFG0598 Protein 4e-104 64