Gene Information

Name : YPA_3095 (YPA_3095)
Accession : YP_653002.1
Strain : Yersinia pestis Antiqua
Genome accession: NC_008150
Putative virulence/resistance : Virulence
Product : outer membrane usher protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 3433214 - 3435694 bp
Length : 2481 bp
Strand : -
Note : -

DNA sequence :
ATGAGAATAATTAAAAAAATTCCTATAGCAATGACTACATCATTGATCATGCTCAGTGGAGCAGTCAGTGCTATTGATTT
TAATACTGATGCAATGGATGCTAACGACAAACAGAATATTGATCTTTCTCATTTTACGAACGTTGGCTATATCATGCCGG
GTGAGTATCGGTTGGAGATCAACGTCAATAATCACCGTATTCCCGAGCAGGTGATCGCTTTTTATGCCCGTGATGATGAA
CCGAATAGCAGTGAGGTGTGCCTACCGGAAGCGGTGGTGGAACAGTTTGGTCTGAAGCCTGATGTGCTGCAAAAGATCAC
ATTCTGGCATGAGGGGCAATGCGCAGATTTGCGTGAGCTGGCGGGATTAACCACGGAGGTTGATTTAGCGACCAGCACGT
TAGCTATCAATGTTCCGCAAGACTGGATGGAATACAGTGACAGCAATTGGGTGCCGTCTTCTCAATGGGATGAGGGGATC
CCTGGGTTTCTGTTGGATTACAACGTGAACTCGCTGTTTAGTAAGCCGAAAGAGAGTGGTTCCACCCGGAATATCAGTCT
CAACGGTACGTCGGGTCTGAATGCGGGCCCCTGGCGGTTACGGGGCGATTATCAAGGGAACTACAGCCACAACAGTGGCG
AGCAGAACTCGTCTACCAGTACATTTGACTGGAGCCGGATCTATATGTATCGGGCGATCAAGTCACTGGCAGCTACCTTG
AGCGTTGGTGAAAACTATTTCGCCTCCAGCCTTTTCGATACGTTCCGTTATGCCGGAGCCAGTTTGTCCAGCGATGAACG
TATGTTGCCACCTAATTTACGCGGTTATGCCCCTGAGGTTAGCGGGATAGCCAGAACCAACGCCAAAGTGACGGTCTCCC
AGCAGGGGCGCATACTGTATCAAACCACGGTGGCCTCCGGTCCTTTTCGTATTCAGGAACTGAGTGATTCTGTTTCCGGG
CGGCTGGATGTCAGCGTGGAGGAGCAGGATGGCACGGTACAAACTTTTCAGGTGGAGACGGCTGCGGTTCCCTATCTGAC
CCGCCCTGGTGCAATCCGCTATAAAACGTCGGTGGGCCAGCCCTCAACGCTGAATCATGGGACGGAAGGCCCGGTCTTTG
CCAGTGGCGAATTCTCTTGGGGGGTCAGTAATCGCTGGTCACTGTTTGGCGGGGCCATTGGCTCGGGTGATTACAATGCC
GTGTCGGTTGGGGTTGGCCGTGATTTATATGCATTTGGTGCCATTTCAACGGATATCACCCAAACCCGTGCATCGGGCCT
TCCCAACCAAGAGACGCAGAGCGGGAAATCGTTGCGCGTCAGGTATGCCAAGCGCTTTGATGAACTGAACAGTGATATCT
CGCTGGCGGGGAACCGTTTTTTTGAACGTGAATTCATGTCGATGAATCAGTATTTCGGCACCCGTTATTTCGATAATGAC
CTTGGGCGCAACAAGGAAATGTATACGGTGACGGCGAGTAAAAATTTTCCTGATATCCAGACCAATATCAATTTTTCATA
CAGTTACCAGAATTATTGGGATCAGCCCACGTCTAACAGCTACAGCGCGACGGTCAGCCACGCTTTTGATGCTTTTTCTC
TCAAAGATATGACGGTCAACCTTTCTGCCAGCCGTAGCAAAAATAACGGCGTGAATGATGATGTGCTGTATCTGAGTTTT
TCGGTGCCATTAGGCAATCAACAAACCCTCAGCTACAGCGGGCAACATAATGGTCAAGGGAACAACCAGACCGTGAATTA
TTCTAACAGCTCGGCTATCGATAGCAGCTACCGGTTATCCGCAGGGGTTAACAACAGCAATGATAATGGTGCGCGCGGCC
AGTTCAGCGGTTTTTATATTCATCGCAGCAGCATTGCTGAAACCAGCCTTAATGTCGCTTATGCGCAGGATGATTTTACC
TCGACCGGGGTTTCTATGCGCGGGGGCGCGACAGTTACTGCGAAAGGTGCGGCATTACACGGCCCCGGTATGAGTGGCGG
CACCCGCCTGATGGTCAATACCGATGATATTGCTGGCGTCCCACTGGAAGAGCGGAATATTCGTTCAAACCGTTTTGGTA
TTGCTGTGCTGAATAATATTAACAGCTACTACCGTACAGATACGCGTATCGATATCAATCAGTTGGCTGATGATGTTGAA
GTTAAGCAGTCTGCGGTGGAGTTCGCCCTGACCGAAGGGGCTATTGGTTATCGCCGTTTCGCCATGATGAAAGGGGAGAA
GGTACTGGCAACCATCAGCCTGACCGACAGTAGCCATCCGCCTTTTGGTAGTTTGGTCATCAGTGCCAAAGGGCAGGAAC
TGGGGATCGTTAGCGATGACGGTTTTACTTACCTGAGTGGAGTGGAGCCAGGAGAAACACTGGATGTCGTTTGGAGTGGT
GCTAAGCAGTGCCAGGTGGCGATCCCAGCAGTAATACAGCCGCAGGCGCAAATATTATTACCCTGCATATCCGTTAACTA
A

Protein sequence :
MRIIKKIPIAMTTSLIMLSGAVSAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEINVNNHRIPEQVIAFYARDDE
PNSSEVCLPEAVVEQFGLKPDVLQKITFWHEGQCADLRELAGLTTEVDLATSTLAINVPQDWMEYSDSNWVPSSQWDEGI
PGFLLDYNVNSLFSKPKESGSTRNISLNGTSGLNAGPWRLRGDYQGNYSHNSGEQNSSTSTFDWSRIYMYRAIKSLAATL
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILYQTTVASGPFRIQELSDSVSG
RLDVSVEEQDGTVQTFQVETAAVPYLTRPGAIRYKTSVGQPSTLNHGTEGPVFASGEFSWGVSNRWSLFGGAIGSGDYNA
VSVGVGRDLYAFGAISTDITQTRASGLPNQETQSGKSLRVRYAKRFDELNSDISLAGNRFFEREFMSMNQYFGTRYFDND
LGRNKEMYTVTASKNFPDIQTNINFSYSYQNYWDQPTSNSYSATVSHAFDAFSLKDMTVNLSASRSKNNGVNDDVLYLSF
SVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLSAGVNNSNDNGARGQFSGFYIHRSSIAETSLNVAYAQDDFT
STGVSMRGGATVTAKGAALHGPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVISAKGQELGIVSDDGFTYLSGVEPGETLDVVWSG
AKQCQVAIPAVIQPQAQILLPCISVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 0.0 50
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 0.0 49
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 0.0 49
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 0.0 49
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 0.0 49
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 0.0 48
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 0.0 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPA_3095 YP_653002.1 outer membrane usher protein VFG0884 Protein 0.0 49
YPA_3095 YP_653002.1 outer membrane usher protein VFG1548 Protein 0.0 49
YPA_3095 YP_653002.1 outer membrane usher protein VFG0895 Protein 0.0 49