Gene Information

Name : YPN_2447 (YPN_2447)
Accession : YP_648375.1
Strain : Yersinia pestis Nepal516
Genome accession: NC_008149
Putative virulence/resistance : Virulence
Product : iron-siderophore ABC transporter ATP-binding
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2739373 - 2740221 bp
Length : 849 bp
Strand : +
Note : -

DNA sequence : 
GTGAGATCCCAAAGAGAGCTAACATCCCCCATGACACCATTGGAGAACCCGGGCGATATCAGTGATAAACCGCGTTTAAC
CACCCAAAAACTGTCACTGGGCTACGGCCAGCAACTTATTATCAATAAGCTTAGCCTGAGCATTAAAAACGGCGCGTTCA
GCGTCATTATCGGCCCAAACGGTTGTGGTAAATCGACGTTGTTGCGAGCGCTCAGCCGTAGCTTGTTACCACAAAATGGC
AGTATCAGGTTAGATCAACAGGATATTCAGCACTACAAAGCCAAGGTCTTTGCCCGCCAGTTATCGCTACTTTCTCAGGG
CGCAAGTATTTCTGAAACCTTGACCGTGTTTGATCTGGTTTCCCGTGGCCGTTACGCCCATCAATCATTCTTTCATCAAT
GGTCGACGGAAGATGAACGTATCGTAAAAGCCGCTATCAGCGCCGTTAATCTGGAGAGTCTGGTGCAGCAGAGAGTCAGT
GAACTCTCTGGTGGTCAGCGGCAACGTGCGTGGTTTGCCATGACACTGGCTCAACATACACCGATTGTTTTATTGGATGA
ACCGACCACATATTTGGATATCGCGCACCAAATTGAAATGCTGGATTTATGCCAAGAACTGCAACAACAGGGGAAAACGC
TGGTATTGGTGCTACACGATATTAATCAGGCTCTGCGTTATGCCACCCACCTGATTATGTTGAAAGAGGGGCAAATTTAT
GCAGAAGGTTTACCAGAATCTATCGTTACTGAAGACAGCATTGCCGCCGTTTTTGGGCTACGTTGCCGGATCATTACTGA
CCCTGAATCCGGCAAGCCTTTGGTGATACCCCGCCGTCAGTCGCGTTAG

Protein sequence : 
MRSQRELTSPMTPLENPGDISDKPRLTTQKLSLGYGQQLIINKLSLSIKNGAFSVIIGPNGCGKSTLLRALSRSLLPQNG
SIRLDQQDIQHYKAKVFARQLSLLSQGASISETLTVFDLVSRGRYAHQSFFHQWSTEDERIVKAAISAVNLESLVQQRVS
ELSGGQRQRAWFAMTLAQHTPIVLLDEPTTYLDIAHQIEMLDLCQELQQQGKTLVLVLHDINQALRYATHLIMLKEGQIY
AEGLPESIVTEDSIAAVFGLRCRIITDPESGKPLVIPRRQSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-49 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-49 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-45 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-58 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 8e-58 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 7e-58 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-58 45
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-48 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-47 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-50 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-50 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-50 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPN_2447 YP_648375.1 iron-siderophore ABC transporter ATP-binding BAC0164 Protein 1e-45 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPN_2447 YP_648375.1 iron-siderophore ABC transporter ATP-binding VFG0925 Protein 2e-63 55
YPN_2447 YP_648375.1 iron-siderophore ABC transporter ATP-binding VFG1042 Protein 1e-45 45