Gene Information

Name : fliI (YPN_2296)
Accession : YP_648224.1
Strain : Yersinia pestis Nepal516
Genome accession: NC_008149
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 2578272 - 2579792 bp
Length : 1521 bp
Strand : +
Note : involved in type III protein export during flagellum assembly

DNA sequence : 
ATGCTGGCAGCTGTAAAGTCAGCGCGGAAGAAGGCGATTTGGATGCCAGTCTGGCGACCCGTTGGCATGAACTGTGCCGT
CTGGCCGCGCCGGGGGAACTGTGATGCCCCCCGCCTCAGCCGCTGGCTTACCTCTTTAGATAAATTCGAAGAGCGTATCA
GCCAAACGACAACAATCCGCCGTTATGGCCGCTTGACCCGCGCCACCGGTTTAGTGCTGGAAGCCACTGGTCTGCAATTG
CCGTTAGGGGCGACCTGTCTGATTGAGCGCCATAATGGCGGTGAAGTGCAGGAAGTCGAAAGCGAAGTGGTTGGTTTTAA
CGGTCAGCATCTGTTTCTTATGCCTTTGGAAGATGTGGAAGGTATCGTCCCCGGTGCCAGAGTGTATGCCCGAGTCACCA
CCAGCGGCACGTCTGCCAGTAAACAGTCAATTTCTAGTAAACAATCAATTCCCAGTAAACAATCATTCGCCAGTAAACAA
TTACCCCTTGGCCCCGAGTTATTGGGCCGGGTATTGGATGGCAGTGCCAAACCGCTTGATGGCTTACCGGCACCTGAAAC
CGGTTATCGTGCACCACTGATTACACCACCGATAAACCCTTTGCAACGCACCGCCATTGTCCAAGTCTTGGATGTGGGCG
TGCGTACCATTAACGCCTTGTTGACGGTCGGGCGCGGCCAGCGGATGGGGCTGTTTGCTGGCTCTGGGGTTGGCAAAAGC
GTACTGCTCGGCATGATGGCCCGTTACACACAGGCTGACGTGATCGTGGTTGGGCTGATTGGTGAGCGTGGCCGTGAAGT
CAAAGATTTTATCGAAAATATTCTCGGGGCTGAAGGCCGTGCCCGTTCGGTGGTTATCGCCGCGCCAGCCGATGTGTCAC
CGTTGCTGCGTATGCAAGGTGCCGCCTATGCCACCCGTATTGCCGAAGATTTCCGCGATCGTGGTCAGCATGTGTTGCTA
ATTATGGACTCCCTAACCCGCTATGCCATGGCGCAACGTGAAATCGCGCTGGCTATCGGCGAGCCTCCCGCGACCAAAGG
TTATCCGCCCTCCGTCTTCGCCAAATTACCGGCACTGGTTGAACGGGCGGGTAACGGTGTTTCAGGCGGCGGCTCCATTA
CCGCATTTTATACCGTCCTCACCGAAGGTGATGATCAGCAAGATCCTATTGCTGACTCTGCGCGCGCCATCCTCGATGGC
CATGTGGTGCTATCTCGCCGTTTGGCTGAATCCGGTCACTATCCGGCTATCGATATCGAAGCCTCTATCAGCCGTGCCAT
GACCTCATTAATCGATGATGACCATTACAGCCGGGTGCGCCAGTTTAAACAACTGCTTGCCAGTTATCAGCGTAACCGCG
ATTTGATCAGTGTCGGGGCTTATGCTGCGGGCAGTGATCCCTTATTGGACAAGGCGATTGCCCTGTACCCACAGATGGAG
GCTTTCTTGCAGCAAGGCATGTTTGAGCGCAGCAGTTTTGATGATGCCTGCCAGCATTTGAAGGTTTTATTTCCAGGATA
A

Protein sequence : 
MLAAVKSARKKAIWMPVWRPVGMNCAVWPRRGNCDAPRLSRWLTSLDKFEERISQTTTIRRYGRLTRATGLVLEATGLQL
PLGATCLIERHNGGEVQEVESEVVGFNGQHLFLMPLEDVEGIVPGARVYARVTTSGTSASKQSISSKQSIPSKQSFASKQ
LPLGPELLGRVLDGSAKPLDGLPAPETGYRAPLITPPINPLQRTAIVQVLDVGVRTINALLTVGRGQRMGLFAGSGVGKS
VLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLL
IMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGVSGGGSITAFYTVLTEGDDQQDPIADSARAILDG
HVVLSRRLAESGHYPAIDIEASISRAMTSLIDDDHYSRVRQFKQLLASYQRNRDLISVGAYAAGSDPLLDKAIALYPQME
AFLQQGMFERSSFDDACQHLKVLFPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-75 45
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-75 45
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 5e-76 45
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-75 45
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-75 45
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-75 45
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-75 45
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-72 44
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-72 44
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 1e-70 42
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 6e-62 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_648224.1 flagellum-specific ATP synthase VFG2331 Protein 0.0 92
fliI YP_648224.1 flagellum-specific ATP synthase VFG2499 Protein 3e-141 66
fliI YP_648224.1 flagellum-specific ATP synthase VFG1254 Protein 9e-117 59
fliI YP_648224.1 flagellum-specific ATP synthase VFG0192 Protein 9e-76 44
fliI YP_648224.1 flagellum-specific ATP synthase VFG2144 Protein 1e-79 43
fliI YP_648224.1 flagellum-specific ATP synthase VFG0390 Protein 2e-71 42