Gene Information

Name : YPN_1894 (YPN_1894)
Accession : YP_647823.1
Strain : Yersinia pestis Nepal516
Genome accession: NC_008149
Putative virulence/resistance : Virulence
Product : ATP-binding transport protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2138161 - 2139051 bp
Length : 891 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCCACCCTGTTTTTGTCCGCCCTGAGCTGGTAGTGGATAACGTCACTGTCACTTATAACAATGGTCATACTGCCAT
TTATGACGCCAGCTTTTCACTAACGGGTGGGACGATCTGTGCACTGGTAGGTGTTAATGGCAGCGGTAAATCGACCTTAT
TTAAAAGCATTATGGGGTTAGTCAAGCCCAGTGTGGGCAAAGTGGAACTGAGTCACAAACCTATCAGTCATGCACTAAAA
CAAAATACGATTGCTTATGTACCACAGACAGAAGATGTCGATTGGAACTTCCCTGTGCTTGTGGAAGATGTCGTGATGAT
GGGCCGTTACGGTAAAATGAATTTTCTACGAATTCCCAGTCGTGAAGACAAAGCCATTGTGAATAAATCCATTGAACGAG
TTGGGTTAACGGCATTGCGTTCACGGCAAATTGGTGAACTGTCTGGTGGCCAGAAAAAACGTGTTTTCTTGGCCCGAGCC
CTTGCCCAACAAGGCACACTCTTACTACTGGATGAGCCATTTACCGGCGTTGACGTCAAAACTGAAAATGCCATTATTGA
GTTACTGCAATCTCTACGTGACGAAGGCCATCTGATTCTGGTTTCAACTCATAACCTAGGCAGCGTGCCGGAATTTTGTG
ATCACGTCATCCTAATTAATCAGACGGTGCTGGCCGCGGGCCCAATTGAAACGACATTTACCCAGAAAAACCTCGAGATG
ACCTTTGGCGGGGTATTGCGCCATATCAATCTGTCGGGGACGGCACTGCATGATGATAATGATCCGCGCACCGTCACCGT
AATAACTGATGATGAACGCCCCGCAGTATTTTATGGTCATACTAAAAATGATCCGCCTGCACAAAGCCAGTCAAAGGAGC
AAAATTCCTGA

Protein sequence : 
MSHPVFVRPELVVDNVTVTYNNGHTAIYDASFSLTGGTICALVGVNGSGKSTLFKSIMGLVKPSVGKVELSHKPISHALK
QNTIAYVPQTEDVDWNFPVLVEDVVMMGRYGKMNFLRIPSREDKAIVNKSIERVGLTALRSRQIGELSGGQKKRVFLARA
LAQQGTLLLLDEPFTGVDVKTENAIIELLQSLRDEGHLILVSTHNLGSVPEFCDHVILINQTVLAAGPIETTFTQKNLEM
TFGGVLRHINLSGTALHDDNDPRTVTVITDDERPAVFYGHTKNDPPAQSQSKEQNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-79 63
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-79 63
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-80 63
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-80 63
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-79 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPN_1894 YP_647823.1 ATP-binding transport protein BAC0440 Protein 3e-140 100
YPN_1894 YP_647823.1 ATP-binding transport protein BAC0350 Protein 8e-80 63
YPN_1894 YP_647823.1 ATP-binding transport protein BAC0400 Protein 2e-46 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPN_1894 YP_647823.1 ATP-binding transport protein VFG0526 Protein 7e-80 63