Gene Information

Name : YPN_1893 (YPN_1893)
Accession : YP_647822.1
Strain : Yersinia pestis Nepal516
Genome accession: NC_008149
Putative virulence/resistance : Virulence
Product : periplasmic-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2137196 - 2138164 bp
Length : 969 bp
Strand : +
Note : -

DNA sequence : 
ATGTTAATTAAGAAAAAAAGTCCTTATCTCAAAATGATAGAACGACTAAACTCCCCTTTTCTACGGGCTGCAGCCTTGTT
TACAATTGTCGCATTCTCATCGCTGATCAGTACCGCTGCTTTAGCAGAAAATAATCCCAGCGATACAGCCAAAAAATTCA
AAGTTGTGACTACATTCACAATCATTCAGGATATTGCACAAAATATCGCCGGTGATGTTGCCGTGGTGGAGTCAATAACC
AAGCCAGGCGCAGAGATTCATGACTATCAACCTACCCCACGAGATATTGTAAAAGCACAGTCAGCAGACCTTATCTTATG
GAATGGCATGAATCTGGAGCGTTGGTTTGAGAAGTTCTTCGAAAGTATTAAAGATGTCCCGTCTGCCGTCGTGACCGCAG
GTATTACACCCCTGCCTATCCGTGAAGGCCCCTATAGCGGCATTGCCAACCCACATGCCTGGATGTCGCCATCAAATGCG
CTAATATATATTGAGAATATCCGCAAAGCGTTAGTTGAACACGATCCCGCTCATGCAGAAACCTATAACCGTAACGCGCA
AGCCTATGCTGAAAAAATTAAGGCGCTAGATGCTCCACTGCGTGAGCGTTTATCTCGTATTCCTGCGGAACAGCGTTGGT
TAGTAACCAGTGAAGGGGCATTTAGTTATCTTGCCAAAGACTATGGTTTTAAAGAGGTTTACTTATGGCCAATCAATGCA
GAGCAACAAGGTATTCCGCAACAAGTTAGACACGTGATTGATATTATTCGCGAAAATAAAATTCCGGTGGTGTTTAGTGA
GAGTACTATTTCCGACAAACCCGCCAAACAAGTGAGTAAAGAAACCGGTGCACAATATGGCGGCGTGCTATATGTTGATT
CTCTGTCGGGCGAAAAAGGCCCGGTCCCCACTTACATCAGTTTAATTAACATGACTGTAGATACTATCGCTAAAGGATTC
GGTCAATGA

Protein sequence : 
MLIKKKSPYLKMIERLNSPFLRAAALFTIVAFSSLISTAALAENNPSDTAKKFKVVTTFTIIQDIAQNIAGDVAVVESIT
KPGAEIHDYQPTPRDIVKAQSADLILWNGMNLERWFEKFFESIKDVPSAVVTAGITPLPIREGPYSGIANPHAWMSPSNA
LIYIENIRKALVEHDPAHAETYNRNAQAYAEKIKALDAPLRERLSRIPAEQRWLVTSEGAFSYLAKDYGFKEVYLWPINA
EQQGIPQQVRHVIDIIRENKIPVVFSESTISDKPAKQVSKETGAQYGGVLYVDSLSGEKGPVPTYISLINMTVDTIAKGF
GQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 4e-84 63
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 4e-84 63
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 4e-84 63
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-84 63
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-84 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPN_1893 YP_647822.1 periplasmic-binding protein BAC0439 Protein 3e-135 100
YPN_1893 YP_647822.1 periplasmic-binding protein BAC0349 Protein 2e-84 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPN_1893 YP_647822.1 periplasmic-binding protein VFG0525 Protein 2e-84 63