Gene Information

Name : YPN_1481 (YPN_1481)
Accession : YP_647411.1
Strain : Yersinia pestis Nepal516
Genome accession: NC_008149
Putative virulence/resistance : Virulence
Product : transcriptional activator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1685055 - 1685747 bp
Length : 693 bp
Strand : -
Note : -

DNA sequence : 
ATGCGGCTATTGTTGGTAGAAGATGAGGAGAAGACATCTTCGTATATCAATCGCGCCCTCAGCGAGTTGGGCTTTACCGT
CGATGTAGCGGCCACCGGGATCGACGGATTATATCTGGCTCTTGAGTATGATTACGATACGATTGTGCTCGATGTCATGT
TGCCCGGCATGGATGGTTACAGCGTTCTCGAAGGCCTACGCGCCAGCAAACAAACTCCGGTTCTGATGTTATCCGCCCGT
GGCTCGGTTGATGAACGAGTTAAGGGCCTGCGTCACGGTGCCGACGATTATTTGCCTAAGCCTTTTTCGCTGATTGAACT
GGTTGCGCGTATCCAGGCGTTGTTGAGGCGGCGTCCCAGTGATGGTGTAGATGTCAGCCAATTGCACATTAATGATCTAC
ATCTCGACCTGCTGGCAAGGCGTGTCACGCGAGCCGGTGAACGTCTTGAACTCACCGCCAAAGAGTTCGCCCTGTTAAGC
CTGTTAGCCAGACATCAGGGGGAAATTCTGTCAAAAATGATGATTGCAGAGCAGGTCTGGGACATGAATTTTGACAGCGA
TGCTAATGTCGTTGAGGTGGCGATAAAACGCCTGCGGGCGAAAATAGATACGCCCTACCCGGTCAAACTGCTGCATACAG
TGCGAGGCATGGGGTATGTCCTTGAAACTCGCCCCGATCGCCAGACTAAATAG

Protein sequence : 
MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGYSVLEGLRASKQTPVLMLSAR
GSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPSDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLS
LLARHQGEILSKMMIAEQVWDMNFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLETRPDRQTK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-54 50
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-52 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPN_1481 YP_647411.1 transcriptional activator BAC0083 Protein 2e-62 61
YPN_1481 YP_647411.1 transcriptional activator BAC0197 Protein 4e-60 58
YPN_1481 YP_647411.1 transcriptional activator BAC0638 Protein 7e-53 57
YPN_1481 YP_647411.1 transcriptional activator BAC0125 Protein 8e-61 56
YPN_1481 YP_647411.1 transcriptional activator BAC0111 Protein 1e-59 53
YPN_1481 YP_647411.1 transcriptional activator BAC0347 Protein 1e-52 51
YPN_1481 YP_647411.1 transcriptional activator BAC0308 Protein 3e-52 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPN_1481 YP_647411.1 transcriptional activator VFG0596 Protein 3e-54 50
YPN_1481 YP_647411.1 transcriptional activator VFG1389 Protein 2e-38 48
YPN_1481 YP_647411.1 transcriptional activator VFG1390 Protein 3e-40 44
YPN_1481 YP_647411.1 transcriptional activator VFG1386 Protein 5e-35 43